CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26560	Canola	nucleus	95.77	96.92
CDX98069	Canola	nucleus	84.52	85.77
CDY21048	Canola	nucleus	84.79	85.35
CDY31263	Canola	nucleus	84.79	85.01
CDY30075	Canola	nucleus	85.19	84.51
AT1G12380.1	Thale cress	cytosol, nucleus, plastid	88.23	84.11
CDY46928	Canola	cytosol	23.41	65.07
KRH04039	Soybean	nucleus	64.15	64.07
KRH28018	Soybean	nucleus	61.9	64.02
KRH57308	Soybean	nucleus	63.89	63.97
VIT_02s0241g00050.t01	Wine grape	nucleus	65.34	63.82
KRH77421	Soybean	cytosol	62.96	63.47
CDY68721	Canola	nucleus	23.15	63.18
Solyc08g079550.1.1	Tomato	nucleus	65.74	60.54
PGSC0003DMT400010029	Potato	nucleus	65.34	59.88
GSMUA_Achr2P12300_001	Banana	nucleus	52.38	57.31
GSMUA_Achr2P03190_001	Banana	nucleus	40.48	56.35
GSMUA_Achr9P20710_001	Banana	cytosol	48.94	54.9
GSMUA_Achr7P16500_001	Banana	plastid	41.14	54.09
Os04t0261400-01	Rice	cytosol	50.79	49.87
Zm00001d015889_P001	Maize	nucleus	51.98	49.56
Os02t0450000-01	Rice	extracellular	52.91	49.38
Zm00001d004164_P001	Maize	cytosol	49.47	48.32
Zm00001d025091_P001	Maize	nucleus	48.81	47.67
Zm00001d053254_P001	Maize	nucleus	50.13	47.32
TraesCS2A01G059900.1	Wheat	cytosol	49.74	46.77
TraesCS2B01G073600.1	Wheat	cytosol	49.74	46.77
TraesCSU01G024900.1	Wheat	nucleus	49.47	46.29

Protein Annotations

EnsemblPlants:CDY15994	EnsemblPlantsGene:GSBRNA2T00090379001	GO:A0A078FSV4	InterPro:DUF659	InterPro:RNaseH-like_sf	PANTHER:PTHR32166
PANTHER:PTHR32166:SF50	PFAM:PF04937	ProteinID:CDY15994	ProteinID:CDY15994.1	SEG:seg	SUPFAM:SSF53098
UniParc:UPI0004EEBA28	UniProt:A0A078FSV4	MapMan:35.2	:	:	:

Description

BnaC08g41290DBnaC08g41290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FSV4]

Coordinates

chrLK032060:-:143012..145282

Molecular Weight (calculated)

84437.3 Da

IEP (calculated)

8.555

GRAVY (calculated)

-0.344

Length

756 amino acids

Sequence
(BLAST)

001: MSTTNAPTPP PETAIDGLTT DELTTKALNK RYEGLMTVRT KAVKGKGAWY WTHLEPILVR NTDTNLPKAV KLRCSLCDAV FSASNPSRTA SEHLKRGTCP
101: KFNSSVNVNP SPSSSSSSPS HHRKRNSSGA AVPSRLNPPP HSYHVTPITV VDPSRFCVEY SAPPPPPQGQ HLMLSGGKDD LGPLAMLEDS VKKLKSPKPS
201: HTQSLTRSQI ESALSSLSDW VFESCGSVSL SGLEHPKFRA FLTQVGLPII SKKDFATTRL DVKYEEAKSE SESRIRDAMF LQISSDGWKS GEGLVNLVVN
301: LPNGTSLYRR AIPVNGVVPS NYAEEVLLET VKGICGNSPQ RCVGIVSDKF KTKALRSLES QHQWMVNLSC QFQELNSLIK DFVKELPLFK SVSQNCVRLA
401: EFVNNTAQIR NAHCKYQLQE HGEAIMLRLP LSCSSSGSSK ACFLEPLFNL LEDVLSSARA IQMVMHDDAC KAVLIEDHTA REVREMVGDQ GFWNEVEAVH
501: ALIKLVKEMA RRIEEEKLLV GQCLPLWEEL RAKIKDWDSK FNVGEGLVEK LVERRFKKSY HPAWAAAFIL NPLYLIRDST GKYLPPFKCL TPEQEKDVDK
601: LITRLVSRDE AHIALMELMK WRTEGLDPMY ARAVQMKERD PVSGKMRIAN PQSSRLVWET YLSEFRSLGK VAVRLIFLHA TTCGFKCNSS LLKWVNSHGR
701: SHAAIDRAQK LIFISANSKF ERRDFSNEED RDAELLAMAN GDNNLLNDVL VDTSSV

Best Arabidopsis Sequence Match ( AT1G12380.1 )
(BLAST)

001: MATTNAHTAT QQTPPPPPPP PPAPAPPAMD GLTTDELTAK ALNKRYEGLM TVRTKAVKGK GAWYWTHLEP ILVRNTDTGL PKAVKLRCSL CDAVFSASNP
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62870.1); Has 173 Blast hits to 170 proteins in 34 species: Archae - 0; Bacteria - 4; Metazoa - 25; Fungi - 8; Plants - 123; Viruses - 7; Other Eukaryotes - 6 (so /.../NCBI BLink). [Source:TAIR;Acc:AT1G12380]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.