CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026973.1-P	Field mustard	nucleus	97.72	97.72
CDY15994	Canola	nucleus	96.92	95.77
CDX98069	Canola	nucleus	85.94	86.17
CDY21048	Canola	nucleus	85.81	85.35
CDY31263	Canola	nucleus	85.81	85.01
CDY30075	Canola	nucleus	86.48	84.78
AT1G12380.1	Thale cress	cytosol, nucleus, plastid	89.56	84.36
KRH28018	Soybean	nucleus	63.72	65.12
KRH04039	Soybean	nucleus	65.6	64.73
KRH57308	Soybean	nucleus	65.33	64.64
VIT_02s0241g00050.t01	Wine grape	nucleus	66.93	64.6
KRH77421	Soybean	cytosol	64.66	64.4
CDY46928	Canola	cytosol	23.43	64.34
CDY68721	Canola	nucleus	23.16	62.45
Solyc08g079550.1.1	Tomato	nucleus	67.07	61.02
PGSC0003DMT400010029	Potato	nucleus	66.67	60.36
GSMUA_Achr2P12300_001	Banana	nucleus	53.68	58.03
GSMUA_Achr2P03190_001	Banana	nucleus	41.63	57.27
GSMUA_Achr9P20710_001	Banana	cytosol	49.8	55.19
GSMUA_Achr7P16500_001	Banana	plastid	41.9	54.43
Os04t0261400-01	Rice	cytosol	52.48	50.91
Os02t0450000-01	Rice	extracellular	54.89	50.62
Zm00001d015889_P001	Maize	nucleus	53.41	50.32
Zm00001d004164_P001	Maize	cytosol	51.0	49.22
Zm00001d025091_P001	Maize	nucleus	50.33	48.58
Zm00001d053254_P001	Maize	nucleus	51.54	48.06
TraesCS2B01G073600.1	Wheat	cytosol	51.27	47.64
TraesCS2A01G059900.1	Wheat	cytosol	51.14	47.51
TraesCSU01G024900.1	Wheat	nucleus	51.0	47.15

Protein Annotations

EnsemblPlants:CDY26560	EnsemblPlantsGene:GSBRNA2T00035425001	GO:A0A078GJ97	InterPro:DUF659	InterPro:RNaseH-like_sf	PANTHER:PTHR32166
PANTHER:PTHR32166:SF50	PFAM:PF04937	ProteinID:CDY26560	ProteinID:CDY26560.1	SEG:seg	SUPFAM:SSF53098
UniParc:UPI0004EF1D38	UniProt:A0A078GJ97	MapMan:35.2	:	:	:

Description

BnaA09g47170DBnaA09g47170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GJ97]

Coordinates

chrLK032192:-:149558..151801

Molecular Weight (calculated)

83396.1 Da

IEP (calculated)

8.392

GRAVY (calculated)

-0.322

Length

747 amino acids

Sequence
(BLAST)

001: MSTTNAPTPP PIDGLTTDEL TTKALNKRYE GLMTVRTKAV KGKGAWYWTH LEPILVRNTD TNLPKAVKLR CSLCDAVFSA SNPSRTASEH LKRGTCPNFN
101: STVNVNPSPS SSSSSPSHHH RKRNSSGAAV PSRLNHVTPI TVVDPSRFCV EYSVPPPPPG PHLMLSGGKD DLGPLAMLED SVKKLKSPKP SHTQSLTRSE
201: MESALSSLSD WVFESCGSVS LSGLEHPKFR AFLTQVGLPI ISKRDFATTR LDVKYEEAKS ESESRIRDAM FLQIASDGWK SGEGLVNLVV NLPNGTSLYR
301: RAVPVNGVVP SNYAEEVLLE TVKGICGNSP QRCVGIVSDK FKTKALRSLE SQHQWMVNLS CQFQGLNSLI KDFVKELPLF KSVSQNCVRL AEFVNNTAQI
401: RNAHCKYQLQ EHGEAIMLRL PLSCSSSGSS KACFLEPLFN LLEDVLSSAR AIQMVMHDDA CKAVLIEDHT AREVREMVGD QGFWNEVEAV HALIKLVKEM
501: ARRIEEEKLL VGQCLPLWEE LRAKVKDWDS KFNVGEGLVE KLVERRFKKS YHPAWAAAFI LDPLYLIRDS TGKYLPPFKC LTPEQEKDVD KLITRLVSRD
601: EAHIALMELM KWRTEGLDPM YARAVQMKER DPVSGKMRIA NPQSSRLVWE TYLSEFRSLG KVAVRLIFLH ATTCGFKCNS SLLKWVNSHG RSHAAIDRAQ
701: KLIFISANSK FERRDFSNEE DRDAELLAMA NGDDNLLNDV LVDTSSV

Best Arabidopsis Sequence Match ( AT1G12380.1 )
(BLAST)

001: MATTNAHTAT QQTPPPPPPP PPAPAPPAMD GLTTDELTAK ALNKRYEGLM TVRTKAVKGK GAWYWTHLEP ILVRNTDTGL PKAVKLRCSL CDAVFSASNP
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62870.1); Has 173 Blast hits to 170 proteins in 34 species: Archae - 0; Bacteria - 4; Metazoa - 25; Fungi - 8; Plants - 123; Viruses - 7; Other Eukaryotes - 6 (so /.../NCBI BLink). [Source:TAIR;Acc:AT1G12380]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.