Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d015889_P001 | Maize | nucleus | 79.78 | 80.58 |
| Os02t0450000-01 | Rice | extracellular | 73.16 | 72.35 |
| Zm00001d004164_P001 | Maize | cytosol | 59.55 | 61.63 |
| Zm00001d025091_P001 | Maize | nucleus | 58.55 | 60.59 |
| GSMUA_Achr2P03190_001 | Banana | nucleus | 39.45 | 58.2 |
| KRH77421 | Soybean | cytosol | 49.81 | 53.2 |
| VIT_16s0022g01740.t01 | Wine grape | nucleus | 50.31 | 52.89 |
| KRH34341 | Soybean | cytosol, nucleus | 46.94 | 52.66 |
| KRH28018 | Soybean | nucleus | 47.94 | 52.53 |
| KRH57308 | Soybean | nucleus | 49.44 | 52.45 |
| KRG92459 | Soybean | cytosol, nucleus | 45.44 | 52.45 |
| Solyc03g007180.1.1 | Tomato | nucleus | 48.94 | 51.92 |
| KRH04039 | Soybean | nucleus | 49.06 | 51.92 |
| GSMUA_Achr9P20710_001 | Banana | cytosol | 43.57 | 51.78 |
| VIT_02s0241g00050.t01 | Wine grape | nucleus | 49.94 | 51.68 |
| Bra027012.1-P | Field mustard | nucleus | 17.35 | 51.67 |
| Bra026973.1-P | Field mustard | nucleus | 48.06 | 51.54 |
| CDY26560 | Canola | nucleus | 48.06 | 51.54 |
| CDY46928 | Canola | cytosol | 17.48 | 51.47 |
| PGSC0003DMT400079650 | Potato | cytosol, nucleus, plastid | 48.44 | 51.39 |
| CDX98069 | Canola | nucleus | 47.19 | 50.74 |
| KRH09233 | Soybean | nucleus | 47.07 | 50.6 |
| CDY31263 | Canola | nucleus | 47.57 | 50.53 |
| CDY21048 | Canola | nucleus | 47.19 | 50.33 |
| Bra016775.1-P | Field mustard | nucleus | 47.07 | 50.2 |
| CDY15994 | Canola | nucleus | 47.32 | 50.13 |
| AT1G62870.1 | Thale cress | cytosol | 47.57 | 50.0 |
| CDY30075 | Canola | nucleus | 47.57 | 50.0 |
| KRH38730 | Soybean | cytosol | 47.57 | 49.93 |
| Bra019761.1-P | Field mustard | nucleus | 47.19 | 49.93 |
| CDY68721 | Canola | nucleus | 17.23 | 49.82 |
| AT1G12380.1 | Thale cress | cytosol, nucleus, plastid | 48.44 | 48.93 |
| Solyc08g079550.1.1 | Tomato | nucleus | 48.94 | 47.75 |
| PGSC0003DMT400010029 | Potato | nucleus | 49.06 | 47.64 |
| KRG96010 | Soybean | cytosol | 4.0 | 39.51 |
Protein Annotations
| EnsemblPlants:Zm00001d053254_P001 | EnsemblPlants:Zm00001d053254_T001 | EnsemblPlantsGene:Zm00001d053254 | InterPro:RNaseH-like_sf | ncoils:Coil | PANTHER:PTHR32166 |
| PANTHER:PTHR32166:SF53 | ProteinID:AQK59099.1 | SEG:seg | SUPFAM:SSF53098 | UniParc:UPI000220E0E7 | UniProt:K7V4U9 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4:-:222507686..222510091
Molecular Weight (calculated)
88078.9 Da
IEP (calculated)
7.311
GRAVY (calculated)
-0.338
Length
801 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAATAKEEE EEEEEEEEEE EEAPASVPAT APGMGGEEAA ARAAKKRYEA LLAVRSKAVK GKGAWYWAHL EPVLIPPTDT AMPPKAVKLR CALCSAVFSA
101: SNPSRTASEH LKRGTCPNFA ARPQGLAGAS GSQQQQLSLP SNSTASSPVP ISSIAPSSPR RRHQHHHQFR NRKRNSMPPA YTTADPGSHH HHLVVVDPPS
201: VHSPALPALP APPPPHQSAL VLSGGKDDLS ALAKLEDSVK RLKSPKASPV AMMPRPQADA ALALLSDWFL ESSSGVSLSA AGHPKLRAFL RHVGLPDLQL
301: QHADLCGPRL DARFAEARAD ATARVRDALF FQLAADGWRE QVVTFSVNLP NGTTVFDRAV PVPAMAPSDY AEELMLEAVA SVSASGSSND LHRCAGIISD
401: RFKSKALRDL ENENYLMVNL CCQIHGFTRL VRDFARELSL FRSATAKSAK LAAYFNAKQT PRSLLHKHQT QQLGHASLFR VAHVPFNGSG ANCRAAFEML
501: EEILNSAHPL HCAVQEDLYK LLCIDDSAAR EIEEMVHSEA FWVEVDAVHS LVKLIMDMVK EMEADRPLVG QCLPLWEELR SKVRDWCEKF NVDEGTVLSV
601: LEKRFRKNYH PAWSAAFVLD PLYLVKDASG RYLPPFRRLT PDQDKDVDRL ITRMVSREEA HLVLMELMKW RSDGLDPLYA QAVQVRQPDP STGRMKVANK
701: QSSRLVWETC LGELKSLGRV AARLIFLHAT SRGFRCTPSM VRWLSAPRRL AGGNGRAHRL VFVAANSKLE RGDFSNDEDK DAELLADGDD DVANIPGTVE
801: P
101: SNPSRTASEH LKRGTCPNFA ARPQGLAGAS GSQQQQLSLP SNSTASSPVP ISSIAPSSPR RRHQHHHQFR NRKRNSMPPA YTTADPGSHH HHLVVVDPPS
201: VHSPALPALP APPPPHQSAL VLSGGKDDLS ALAKLEDSVK RLKSPKASPV AMMPRPQADA ALALLSDWFL ESSSGVSLSA AGHPKLRAFL RHVGLPDLQL
301: QHADLCGPRL DARFAEARAD ATARVRDALF FQLAADGWRE QVVTFSVNLP NGTTVFDRAV PVPAMAPSDY AEELMLEAVA SVSASGSSND LHRCAGIISD
401: RFKSKALRDL ENENYLMVNL CCQIHGFTRL VRDFARELSL FRSATAKSAK LAAYFNAKQT PRSLLHKHQT QQLGHASLFR VAHVPFNGSG ANCRAAFEML
501: EEILNSAHPL HCAVQEDLYK LLCIDDSAAR EIEEMVHSEA FWVEVDAVHS LVKLIMDMVK EMEADRPLVG QCLPLWEELR SKVRDWCEKF NVDEGTVLSV
601: LEKRFRKNYH PAWSAAFVLD PLYLVKDASG RYLPPFRRLT PDQDKDVDRL ITRMVSREEA HLVLMELMKW RSDGLDPLYA QAVQVRQPDP STGRMKVANK
701: QSSRLVWETC LGELKSLGRV AARLIFLHAT SRGFRCTPSM VRWLSAPRRL AGGNGRAHRL VFVAANSKLE RGDFSNDEDK DAELLADGDD DVANIPGTVE
801: P
001: MATTNAHTAT QQTPPPPPPP PPAPAPPAMD GLTTDELTAK ALNKRYEGLM TVRTKAVKGK GAWYWTHLEP ILVRNTDTGL PKAVKLRCSL CDAVFSASNP
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62870.1); Has 173 Blast hits to 170 proteins in 34 species: Archae - 0; Bacteria - 4; Metazoa - 25; Fungi - 8; Plants - 123; Viruses - 7; Other Eukaryotes - 6 (so /.../NCBI BLink). [Source:TAIR;Acc:AT1G12380]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.