Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d004164_P001 | Maize | cytosol | 90.44 | 90.44 |
| Os04t0261400-01 | Rice | cytosol | 77.78 | 78.18 |
| TraesCS2A01G059900.1 | Wheat | cytosol | 72.35 | 69.65 |
| TraesCS2B01G073600.1 | Wheat | cytosol | 72.09 | 69.4 |
| TraesCSU01G024900.1 | Wheat | nucleus | 70.54 | 67.57 |
| Zm00001d015889_P001 | Maize | nucleus | 63.31 | 61.79 |
| GSMUA_Achr2P03190_001 | Banana | nucleus | 41.09 | 58.56 |
| Zm00001d053254_P001 | Maize | nucleus | 60.59 | 58.55 |
| GSMUA_Achr9P20710_001 | Banana | cytosol | 45.87 | 52.67 |
| KRH57308 | Soybean | nucleus | 50.39 | 51.66 |
| KRH04039 | Soybean | nucleus | 50.26 | 51.39 |
| KRH34341 | Soybean | cytosol, nucleus | 47.29 | 51.26 |
| KRG92459 | Soybean | cytosol, nucleus | 45.74 | 51.01 |
| VIT_16s0022g01740.t01 | Wine grape | nucleus | 49.87 | 50.66 |
| Solyc03g007180.1.1 | Tomato | nucleus | 49.22 | 50.46 |
| CDY26560 | Canola | nucleus | 48.58 | 50.33 |
| VIT_02s0241g00050.t01 | Wine grape | nucleus | 50.26 | 50.26 |
| PGSC0003DMT400079650 | Potato | cytosol, nucleus, plastid | 48.97 | 50.2 |
| Bra026973.1-P | Field mustard | nucleus | 48.32 | 50.07 |
| KRH28018 | Soybean | nucleus | 47.16 | 49.93 |
| CDY31263 | Canola | nucleus | 48.58 | 49.87 |
| CDX98069 | Canola | nucleus | 47.93 | 49.8 |
| KRH77421 | Soybean | cytosol | 48.06 | 49.6 |
| AT1G62870.1 | Thale cress | cytosol | 48.58 | 49.34 |
| CDY46928 | Canola | cytosol | 17.31 | 49.26 |
| Bra019761.1-P | Field mustard | nucleus | 48.06 | 49.14 |
| CDY21048 | Canola | nucleus | 47.67 | 49.13 |
| CDY30075 | Canola | nucleus | 48.19 | 48.95 |
| Bra016775.1-P | Field mustard | nucleus | 47.42 | 48.87 |
| CDY15994 | Canola | nucleus | 47.67 | 48.81 |
| Bra027012.1-P | Field mustard | nucleus | 16.93 | 48.7 |
| AT1G12380.1 | Thale cress | cytosol, nucleus, plastid | 49.35 | 48.17 |
| KRH38730 | Soybean | cytosol | 47.29 | 47.97 |
| CDY68721 | Canola | nucleus | 17.05 | 47.65 |
| Solyc08g079550.1.1 | Tomato | nucleus | 50.52 | 47.62 |
| KRH09233 | Soybean | nucleus | 45.74 | 47.52 |
| PGSC0003DMT400010029 | Potato | nucleus | 50.0 | 46.91 |
| KRG96010 | Soybean | cytosol | 4.01 | 38.27 |
Protein Annotations
| EnsemblPlants:Zm00001d025091_P001 | EnsemblPlants:Zm00001d025091_T001 | EnsemblPlantsGene:Zm00001d025091 | EntrezGene:103641528 | InterPro:RNaseH-like_sf | PANTHER:PTHR32166 |
| PANTHER:PTHR32166:SF53 | ProteinID:AQK42919.1 | SEG:seg | SUPFAM:SSF53098 | UniParc:UPI000221A243 | UniProt:K7TSH3 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr10:-:103411035..103413359
Molecular Weight (calculated)
83608.5 Da
IEP (calculated)
8.695
GRAVY (calculated)
-0.099
Length
774 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAEEGASAS ASAPAEAGAM VAEEAAARKR YEALVQVRAK AIKGKGAWYW AHLEPVLVPP PASGQPPKMA RLRCTLCAAT FSASNPSRTA SEHLKRGACH
101: NFTSPLAASA PVSTPPPPPP PLSIVAASSV VPISSFPPSS QRRHSTGGGR RKRHALAAAY AAVEAASSQH VVVGEPAIYS TPPTPPALPA PRHQVLSGGR
201: GDLGALARLE DSVKRLKSPV GSPGSMLPRH QADAALALLA DWFLESSGSV SLAAAEHPKL KAFLRQVGIP ELSRADLTRG RLEARFAEAR ADAAARVRDA
301: RFFQLAADGW RDRVVTLAVN LPNGTSVFHH AVPMPAPPSS DYAEVVLLDA ASSVAASADL RHCASVVADR FGSKALRDLE SKHPWMVNLS CQAHCLARVA
401: KDLARELPVV HSAATNCARM AAYFNTTPAV GALLRRHQVQ ELGHAGLLRV AAPLSNGDTE ISAAFAMLDD VLTCARPLQL SVLEEPFKLL CVDDSTAREM
501: VDMVHSAAFW AEVEAAHSLV KLITDMVKEM EAERPLVGQC LPLWEDLRGK VRGWCRKFNV DEGVALSVLE RRFGRSYHPA WSAAFILDPL YLIKDVSGRY
601: LPPFKYLTPE QEKDVDRLIT RLVSPEEAHL AMMELMKWRS EGLDPLYAQA VQVRQPDPAT GKMKIANKQS SRLVWETCLS ELKSLGKVAV RLIFLHATAR
701: GFRCTPTMAR WLTAPGASLR GVARAQRLVF VVANSKLERR EPWSDDDRDA ELLMEGDDDM LTDPTTAIVV PSSV
101: NFTSPLAASA PVSTPPPPPP PLSIVAASSV VPISSFPPSS QRRHSTGGGR RKRHALAAAY AAVEAASSQH VVVGEPAIYS TPPTPPALPA PRHQVLSGGR
201: GDLGALARLE DSVKRLKSPV GSPGSMLPRH QADAALALLA DWFLESSGSV SLAAAEHPKL KAFLRQVGIP ELSRADLTRG RLEARFAEAR ADAAARVRDA
301: RFFQLAADGW RDRVVTLAVN LPNGTSVFHH AVPMPAPPSS DYAEVVLLDA ASSVAASADL RHCASVVADR FGSKALRDLE SKHPWMVNLS CQAHCLARVA
401: KDLARELPVV HSAATNCARM AAYFNTTPAV GALLRRHQVQ ELGHAGLLRV AAPLSNGDTE ISAAFAMLDD VLTCARPLQL SVLEEPFKLL CVDDSTAREM
501: VDMVHSAAFW AEVEAAHSLV KLITDMVKEM EAERPLVGQC LPLWEDLRGK VRGWCRKFNV DEGVALSVLE RRFGRSYHPA WSAAFILDPL YLIKDVSGRY
601: LPPFKYLTPE QEKDVDRLIT RLVSPEEAHL AMMELMKWRS EGLDPLYAQA VQVRQPDPAT GKMKIANKQS SRLVWETCLS ELKSLGKVAV RLIFLHATAR
701: GFRCTPTMAR WLTAPGASLR GVARAQRLVF VVANSKLERR EPWSDDDRDA ELLMEGDDDM LTDPTTAIVV PSSV
001: MATTNAHTAT QQTPPPPPPP PPAPAPPAMD GLTTDELTAK ALNKRYEGLM TVRTKAVKGK GAWYWTHLEP ILVRNTDTGL PKAVKLRCSL CDAVFSASNP
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62870.1); Has 173 Blast hits to 170 proteins in 34 species: Archae - 0; Bacteria - 4; Metazoa - 25; Fungi - 8; Plants - 123; Viruses - 7; Other Eukaryotes - 6 (so /.../NCBI BLink). [Source:TAIR;Acc:AT1G12380]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.