Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d025091_P001 | Maize | nucleus | 78.18 | 77.78 |
| Zm00001d004164_P001 | Maize | cytosol | 78.05 | 77.65 |
| TraesCS2B01G073600.1 | Wheat | cytosol | 78.18 | 74.88 |
| TraesCS2A01G059900.1 | Wheat | cytosol | 78.05 | 74.75 |
| TraesCSU01G024900.1 | Wheat | nucleus | 77.79 | 74.13 |
| Os02t0450000-01 | Rice | extracellular | 69.61 | 66.17 |
| GSMUA_Achr2P03190_001 | Banana | nucleus | 41.69 | 59.12 |
| GSMUA_Achr9P20710_001 | Banana | cytosol | 47.53 | 54.3 |
| KRH57308 | Soybean | nucleus | 52.99 | 54.04 |
| VIT_16s0022g01740.t01 | Wine grape | nucleus | 53.38 | 53.94 |
| KRH04039 | Soybean | nucleus | 52.99 | 53.9 |
| CDY26560 | Canola | nucleus | 50.91 | 52.48 |
| Bra026973.1-P | Field mustard | nucleus | 50.65 | 52.21 |
| VIT_02s0241g00050.t01 | Wine grape | nucleus | 52.47 | 52.2 |
| KRH34341 | Soybean | cytosol, nucleus | 48.18 | 51.96 |
| CDY31263 | Canola | nucleus | 50.78 | 51.86 |
| KRG92459 | Soybean | cytosol, nucleus | 46.62 | 51.73 |
| CDX98069 | Canola | nucleus | 49.74 | 51.41 |
| KRH28018 | Soybean | nucleus | 48.7 | 51.3 |
| KRH77421 | Soybean | cytosol | 49.87 | 51.2 |
| CDY21048 | Canola | nucleus | 49.87 | 51.13 |
| Bra016775.1-P | Field mustard | nucleus | 49.61 | 50.87 |
| Solyc03g007180.1.1 | Tomato | nucleus | 49.87 | 50.86 |
| CDY15994 | Canola | nucleus | 49.87 | 50.79 |
| PGSC0003DMT400079650 | Potato | cytosol, nucleus, plastid | 49.61 | 50.6 |
| CDY30075 | Canola | nucleus | 50.0 | 50.52 |
| Bra019761.1-P | Field mustard | nucleus | 49.61 | 50.46 |
| KRH09233 | Soybean | nucleus | 48.31 | 49.93 |
| AT1G62870.1 | Thale cress | cytosol | 49.22 | 49.74 |
| Solyc08g079550.1.1 | Tomato | nucleus | 52.99 | 49.7 |
| AT1G12380.1 | Thale cress | cytosol, nucleus, plastid | 51.17 | 49.68 |
| PGSC0003DMT400010029 | Potato | nucleus | 52.73 | 49.21 |
| KRH38730 | Soybean | cytosol | 48.57 | 49.02 |
| Bra027012.1-P | Field mustard | nucleus | 16.1 | 46.1 |
| CDY46928 | Canola | cytosol | 16.1 | 45.59 |
| CDY68721 | Canola | nucleus | 16.1 | 44.77 |
| KRG96010 | Soybean | cytosol | 3.9 | 37.04 |
Protein Annotations
| EMBL:AK109843 | EnsemblPlants:Os04t0261400-01 | EnsemblPlantsGene:Os04g0261400 | EntrezGene:4335326 | InterPro:RNaseH-like_sf | ncoils:Coil |
| PANTHER:PTHR32166 | PANTHER:PTHR32166:SF53 | ProteinID:BAF14245.1 | ProteinID:BAS88295.1 | ProteinID:CAE05175.2 | ProteinID:EAZ29998.1 |
| RefSeq:XP_015634630.1 | SEG:seg | SUPFAM:SSF53098 | UniParc:UPI00001B1B1E | UniProt:Q7F9J2 | MapMan:35.2 |
Description
Cytochrome c region domain containing protein. (Os04t0261400-01)
Coordinates
chr4:+:10624933..10627828
Molecular Weight (calculated)
82861.3 Da
IEP (calculated)
8.708
GRAVY (calculated)
-0.147
Length
770 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAEEAGGAS AEASGSGSAP AGAAMVPGGE EAAARKRYDA LMQVRAKAVK GKGAWYWAHL EPVLVPPPGS GVPPKAARLR CVLCAATFSA SNPSRTASEH
101: LKRGACPNFA AQQGAAAQPH QAMTVSAASS VVPISSIPPS SQRRHSTGGG GRKRHALAAA YAAVEAAASQ HVVVGDPSSY SPTPPTPPAL PAPRQVLSGG
201: RGDLGALARL EDSVKRLKSP VASPGAMLPR QQAEAALALL AEWFLESSGS VSLASAEHPK LKAFLRQVGL PELSRAELAG ARLNARFAEA RADAAARIRE
301: ARFFQLAADG WREQVVTLSV NLPNGASVFE RAVPTPAPAS SDYAEQLMLE AISSVSASSE LHHCAGIVAD RFGSKALRDL EHKHPWMLNL ACQVHGLSRL
401: VRDMARELPL FHSASANCAK MAAYFNAAPT VRALLHKHQV QEHGHAMLLR VAAPPFDRAA AFAMLEDILT SARPLQLAVH EESYKLVCID DPAAREVGSM
501: VQKVAFWTEV EAAHSLVKLI TDMVKEMEAE RPLVGQCLPL WEDLRGKVRG WCRKFNVDEG IAMNVVEVRF RKSYHPAWSA AFILDPLYLI KDVSGRYLPP
601: FKYLTPEQDK DVDRLITRLV SPEEAHLALM ELMKWRSEGL DPLYAQAVQV RQPDPSTGKM RIANKQSSRL VWETCLSDLK SLGKVAVRLI FLHATAKGFR
701: CAPPMSRWLT APGSSAAGIA RAQRLVYVAA NSKLERRDFS NDDDKDLELL TEGDDDMLTE ATASVDPSSV
101: LKRGACPNFA AQQGAAAQPH QAMTVSAASS VVPISSIPPS SQRRHSTGGG GRKRHALAAA YAAVEAAASQ HVVVGDPSSY SPTPPTPPAL PAPRQVLSGG
201: RGDLGALARL EDSVKRLKSP VASPGAMLPR QQAEAALALL AEWFLESSGS VSLASAEHPK LKAFLRQVGL PELSRAELAG ARLNARFAEA RADAAARIRE
301: ARFFQLAADG WREQVVTLSV NLPNGASVFE RAVPTPAPAS SDYAEQLMLE AISSVSASSE LHHCAGIVAD RFGSKALRDL EHKHPWMLNL ACQVHGLSRL
401: VRDMARELPL FHSASANCAK MAAYFNAAPT VRALLHKHQV QEHGHAMLLR VAAPPFDRAA AFAMLEDILT SARPLQLAVH EESYKLVCID DPAAREVGSM
501: VQKVAFWTEV EAAHSLVKLI TDMVKEMEAE RPLVGQCLPL WEDLRGKVRG WCRKFNVDEG IAMNVVEVRF RKSYHPAWSA AFILDPLYLI KDVSGRYLPP
601: FKYLTPEQDK DVDRLITRLV SPEEAHLALM ELMKWRSEGL DPLYAQAVQV RQPDPSTGKM RIANKQSSRL VWETCLSDLK SLGKVAVRLI FLHATAKGFR
701: CAPPMSRWLT APGSSAAGIA RAQRLVYVAA NSKLERRDFS NDDDKDLELL TEGDDDMLTE ATASVDPSSV
001: MATTNAHTAT QQTPPPPPPP PPAPAPPAMD GLTTDELTAK ALNKRYEGLM TVRTKAVKGK GAWYWTHLEP ILVRNTDTGL PKAVKLRCSL CDAVFSASNP
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62870.1); Has 173 Blast hits to 170 proteins in 34 species: Archae - 0; Bacteria - 4; Metazoa - 25; Fungi - 8; Plants - 123; Viruses - 7; Other Eukaryotes - 6 (so /.../NCBI BLink). [Source:TAIR;Acc:AT1G12380]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.