Factsheet for VIT_02s0241g00050.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0022g01740.t01	Wine grape	nucleus	72.09	73.23
KRH57308	Soybean	nucleus	71.32	73.11
KRH04039	Soybean	nucleus	71.45	73.05
KRH28018	Soybean	nucleus	68.86	72.91
Solyc08g079550.1.1	Tomato	nucleus	76.1	71.74
PGSC0003DMT400010029	Potato	nucleus	76.23	71.52
KRH77421	Soybean	cytosol	69.25	71.47
Bra026973.1-P	Field mustard	nucleus	64.6	66.93
CDY26560	Canola	nucleus	64.6	66.93
AT1G62870.1	Thale cress	cytosol	65.63	66.67
CDY21048	Canola	nucleus	63.95	65.91
CDY31263	Canola	nucleus	64.08	65.78
Bra016775.1-P	Field mustard	nucleus	63.82	65.78
CDX98069	Canola	nucleus	63.18	65.64
CDY15994	Canola	nucleus	63.82	65.34
AT1G12380.1	Thale cress	cytosol, nucleus, plastid	66.02	64.44
Bra019761.1-P	Field mustard	nucleus	62.92	64.33
CDY30075	Canola	nucleus	63.18	64.17
GSMUA_Achr2P12300_001	Banana	nucleus	56.72	63.53
GSMUA_Achr2P03190_001	Banana	nucleus	44.44	63.35
CDY68721	Canola	nucleus	21.58	60.29
CDY46928	Canola	cytosol	21.06	59.93
Bra027012.1-P	Field mustard	nucleus	20.8	59.85
GSMUA_Achr9P20710_001	Banana	cytosol	51.81	59.5
GSMUA_Achr7P16500_001	Banana	plastid	43.41	58.43
Os02t0450000-01	Rice	extracellular	57.11	54.57
Zm00001d015889_P001	Maize	nucleus	54.39	53.09
Os04t0261400-01	Rice	cytosol	52.2	52.47
Zm00001d004164_P001	Maize	cytosol	51.68	51.68
Zm00001d025091_P001	Maize	nucleus	50.26	50.26
Zm00001d053254_P001	Maize	nucleus	51.68	49.94
TraesCS2A01G059900.1	Wheat	cytosol	51.68	49.75
TraesCSU01G024900.1	Wheat	nucleus	51.81	49.63
TraesCS2B01G073600.1	Wheat	cytosol	51.55	49.63
VIT_02s0025g02460.t01	Wine grape	cytosol	40.7	46.26

Protein Annotations

EntrezGene:100253287	wikigene:100253287	MapMan:35.2	EMBL:AM471406	ProteinID:CAN79336	ProteinID:CAN79336.1
ProteinID:CCB47501	ProteinID:CCB47501.1	ncoils:Coil	UniProt:F6H5L2	EMBL:FN595238	EntrezGene:LOC100253287
wikigene:LOC100253287	PANTHER:PTHR32166	PANTHER:PTHR32166:SF50	InterPro:RNaseH-like_sf	SUPFAM:SSF53098	UniParc:UPI00015CE6D7
ArrayExpress:VIT_02s0241g00050	EnsemblPlantsGene:VIT_02s0241g00050	EnsemblPlants:VIT_02s0241g00050.t01	RefSeq:XP_002266405	RefSeq:XP_002266405.1	RefSeq:XP_019073048.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:-:4701465..4703974

Molecular Weight (calculated)

86274.2 Da

IEP (calculated)

8.177

GRAVY (calculated)

-0.291

Length

774 amino acids

Sequence
(BLAST)

001: MAATNTTPPI DSSSAEELTA KAVHKRYEGL VMVRTKAIKG KGAWYWAHLE PLLVHNNDTG LPKAVKLRCS LCEAVFSASN PSRTASEHLK RGTCPNFNSV
101: PKPISSISPS SMASPSSSVQ HNHRKRSSSS SGGGGGGVGG GGSSASYQVS PLAMVDPSRF CGELAYSPAV STTVVTASTG SLLPQQHLML SGGKEDLGAL
201: AMLEDSVKKL KSPKTSPGPA LSKTQIDSAF DFLADWLYES CGSVSFSSLD HPKFRAFLNQ VGLPAISRRE FAGPRLDAKF EEAKAESEAR IRDAMFFQIA
301: SDGWQPKHHG FLGAENLVNL TVNLPNGTSV FRRAVFVSGN VPPKYAEEVL WETITGICGN AVQQCVGVVA DKFKAKALKN LENQNHWMVN LSCQYQGFNS
401: LIKDFSKELP LFQKVTENCL KVANFVNNHS QVRNIFQKYQ LQEYRHVELL RVPVREHEKL NFEPVYTMLE DILNSARALQ LVLLDESYKI VSVEDPIARE
501: FAEMGRDMRF WSELEAVHSL VKLIKEMAQE IETERPLVGQ CLPLWNELRA KVKDWCSKFH IDEAPVEKVI DRRFKKNYHP AWAAAFILDP LYLIRDTSGK
601: YLPPFKCLTP DQEKDVDKLI TRLVSREEAH IALMELMKWR TDGLEPVYAQ AVQLKERDPI TGKMKTANPQ SSRLVWETYL TEFKSLAKVA VRLIFLHATS
701: CGFKCNLSFL RWVCANGHSR AGMYRAQKMI FIAAHSKLER RDFSNDEDKD AELLASTNGE DDVLNEVFVD SSSV

Best Arabidopsis Sequence Match ( AT1G62870.1 )
(BLAST)

001: MATTTNATTT ATQQQTQTQS PTQQPSAEEL ATKALQKRYE GLMMVRTKAV KGKGAWYWSH LEPILLHNTD TGFPKAVKLR CSLCDAVFSA SNPSRTASEH
101: LKRGTCPNFN SLPKPISTIS PSPPPPPSSS HRKRNSSAVE ALNHHHHHPH HHHQGSYNVT PLSVVDPSRF CGQFPVTQQP HLMLSGGKDD LGPLAMLEDS
201: VKKLKSPKTS QTRNLTKAQI DSALDSLSDW VFESCGSVSL SGLEHPKLRA FLTQVGLPII SRRDFVTGRL DLKYEDSRAE AESRIHDAMF FQIASDGWKF
301: DSSGENLVNL IVNLPNGTSL YRRAVFVNGA VPSNYAEEVL WETVRGICGN SPQRCVGIVS DRFMSKALRN LESQHQWMVN LSCQFQGFNS LIRDFVKELP
401: LFKSVSQSCS RLVNFVNSTA QIRNAVCKYQ LQEQGETRML HLPLDSSLFE PLYNLLEDVL SFARAIQLVM HDDVCKAVLM EDHMAREVGE MVGDVGFWNE
501: VEAVYLLLKL VKEMARRIEE ERPLVGQCLP LWDELRSKIK DWYAKFNVVE ERQVEKIVER RFKKSYHPAW AAAFILDPLY LIKDSSGKYL PPFKCLSPEQ
601: EKDVDKLITR LVSRDEAHIA MMELMKWRTE GLDPVYARAV QMKERDPVSG KMRIANPQSS RLVWETYLSE FRSLGRVAVR LIFLHATSCG FKCNSSVLRW
701: VNSNGRSRAA VDRAQKLIFI SANSKFERRD FSNEEERDAE LLAMANGEDD VLNDVLIDTS SV

Arabidopsis Description

F16P17.2 protein [Source:UniProtKB/TrEMBL;Acc:Q9LQ19]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.