CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016775.1-P	Field mustard	nucleus	99.73	99.73
CDY31263	Canola	nucleus	96.94	96.55
CDY26560	Canola	nucleus	85.35	85.81
CDY15994	Canola	nucleus	85.35	84.79
CDX98069	Canola	nucleus	83.22	83.89
CDY30075	Canola	nucleus	83.62	82.41
AT1G12380.1	Thale cress	cytosol, nucleus, plastid	86.02	81.46
CDY46928	Canola	cytosol	23.44	64.71
VIT_02s0241g00050.t01	Wine grape	nucleus	65.91	63.95
KRH77421	Soybean	cytosol	63.78	63.87
KRH28018	Soybean	nucleus	62.05	63.75
KRH57308	Soybean	nucleus	64.05	63.71
KRH04039	Soybean	nucleus	64.05	63.54
CDY68721	Canola	nucleus	23.17	62.82
Solyc08g079550.1.1	Tomato	nucleus	64.98	59.44
PGSC0003DMT400010029	Potato	nucleus	64.58	58.79
GSMUA_Achr2P03190_001	Banana	nucleus	41.41	57.27
GSMUA_Achr2P12300_001	Banana	nucleus	52.46	57.02
GSMUA_Achr9P20710_001	Banana	cytosol	49.4	55.04
GSMUA_Achr7P16500_001	Banana	plastid	41.41	54.09
Zm00001d015889_P001	Maize	nucleus	52.86	50.06
Os02t0450000-01	Rice	extracellular	53.93	50.0
Os04t0261400-01	Rice	cytosol	51.13	49.87
Zm00001d004164_P001	Maize	cytosol	49.8	48.32
Zm00001d025091_P001	Maize	nucleus	49.13	47.67
Zm00001d053254_P001	Maize	nucleus	50.33	47.19
TraesCS2B01G073600.1	Wheat	cytosol	50.07	46.77
TraesCSU01G024900.1	Wheat	nucleus	49.8	46.29
TraesCS2A01G059900.1	Wheat	cytosol	49.4	46.14

Protein Annotations

EnsemblPlants:CDY21048	EnsemblPlantsGene:GSBRNA2T00015213001	GO:A0A078G8P1	InterPro:RNaseH-like_sf	PANTHER:PTHR32166	PANTHER:PTHR32166:SF50
ProteinID:CDY21048	ProteinID:CDY21048.1	SEG:seg	SUPFAM:SSF53098	UniParc:UPI0004EE8532	UniProt:A0A078G8P1
MapMan:35.2	:	:	:	:	:

Description

BnaA08g24770DBnaA08g24770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G8P1]

Coordinates

chrLK032115:-:467347..469732

Molecular Weight (calculated)

84023.8 Da

IEP (calculated)

8.432

GRAVY (calculated)

-0.371

Length

751 amino acids

Sequence
(BLAST)

001: MSTTNTPTAA QPQQQQTPPP PPEITTEELT AKALNKRYEG LTTVRNKAVK GKGAWYWTHL EPTLVRNTDT GLPKAVKLRC SLCDAVFSAS NPSRTASEHL
101: KRGTCPNFTS SVAPPVSAVS PSSSSSPSHH RKRHSSGAVP SRLNPPPSYH VTPITVVDPS RFCGGELPYS APPPPRLMLS GGKDDLGPLA MLEDSVKKLK
201: SPKPSHALTL TRSEIESALD SLSDWVFESC GSVSLSGLEH PKFRSFLTQV GLPIVSKRDF ATTRLELKYE EARAVSESRI LDAMFLQIAS DGWRESLVSL
301: VVNLPNGTSV YRRAVLVNGA VPANYAEEVL LETVKGICGN SPQRCVGIVS DKFNNKALKS LESQHQWMVN LSCQHQELKS LIKDFIKELP LFKSVSQNCT
401: RLGNFINNTA EIRNAHRKYQ MQEHGESIML RLPLHCKACV FEPLFNLLED VLSSARAIHS VMHDDACKAV LMEDHTAREV REMVGDQGFW NEVEAVHALT
501: KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKLVE RRFKKSYHPA WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT
601: RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVT GKMRIANPQS SRLVWETYLS EFRSLGKVAV RLIFLHATTC GFKCNSSLLK WVSSHGRSHA
701: AMDRAQKMIF ISANSKFERR DFSNEEDRDA ELLAMANGDE NLLNDVLVDT S

Best Arabidopsis Sequence Match ( AT1G12380.1 )
(BLAST)

001: MATTNAHTAT QQTPPPPPPP PPAPAPPAMD GLTTDELTAK ALNKRYEGLM TVRTKAVKGK GAWYWTHLEP ILVRNTDTGL PKAVKLRCSL CDAVFSASNP
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62870.1); Has 173 Blast hits to 170 proteins in 34 species: Archae - 0; Bacteria - 4; Metazoa - 25; Fungi - 8; Plants - 123; Viruses - 7; Other Eukaryotes - 6 (so /.../NCBI BLink). [Source:TAIR;Acc:AT1G12380]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.