Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d025091_P001 | Maize | nucleus | 90.44 | 90.44 |
| Os04t0261400-01 | Rice | cytosol | 77.65 | 78.05 |
| TraesCS2A01G059900.1 | Wheat | cytosol | 73.13 | 70.4 |
| TraesCS2B01G073600.1 | Wheat | cytosol | 73.13 | 70.4 |
| TraesCSU01G024900.1 | Wheat | nucleus | 71.71 | 68.69 |
| Zm00001d015889_P001 | Maize | nucleus | 63.31 | 61.79 |
| Zm00001d053254_P001 | Maize | nucleus | 61.63 | 59.55 |
| GSMUA_Achr2P03190_001 | Banana | nucleus | 41.09 | 58.56 |
| GSMUA_Achr9P20710_001 | Banana | cytosol | 45.99 | 52.82 |
| KRH34341 | Soybean | cytosol, nucleus | 48.19 | 52.24 |
| KRH57308 | Soybean | nucleus | 50.9 | 52.19 |
| KRG92459 | Soybean | cytosol, nucleus | 46.77 | 52.16 |
| KRH04039 | Soybean | nucleus | 50.78 | 51.92 |
| KRH28018 | Soybean | nucleus | 48.97 | 51.85 |
| VIT_16s0022g01740.t01 | Wine grape | nucleus | 50.9 | 51.71 |
| VIT_02s0241g00050.t01 | Wine grape | nucleus | 51.68 | 51.68 |
| Solyc03g007180.1.1 | Tomato | nucleus | 49.87 | 51.13 |
| CDY26560 | Canola | nucleus | 49.22 | 51.0 |
| KRH77421 | Soybean | cytosol | 49.35 | 50.93 |
| PGSC0003DMT400079650 | Potato | cytosol, nucleus, plastid | 49.61 | 50.86 |
| Bra026973.1-P | Field mustard | nucleus | 48.97 | 50.74 |
| CDY31263 | Canola | nucleus | 49.1 | 50.4 |
| CDX98069 | Canola | nucleus | 48.45 | 50.34 |
| CDY21048 | Canola | nucleus | 48.32 | 49.8 |
| Bra019761.1-P | Field mustard | nucleus | 48.58 | 49.67 |
| Bra016775.1-P | Field mustard | nucleus | 48.06 | 49.53 |
| CDY15994 | Canola | nucleus | 48.32 | 49.47 |
| KRH38730 | Soybean | cytosol | 48.71 | 49.41 |
| AT1G62870.1 | Thale cress | cytosol | 48.58 | 49.34 |
| CDY30075 | Canola | nucleus | 48.58 | 49.34 |
| AT1G12380.1 | Thale cress | cytosol, nucleus, plastid | 49.87 | 48.68 |
| KRH09233 | Soybean | nucleus | 46.77 | 48.59 |
| Solyc08g079550.1.1 | Tomato | nucleus | 50.9 | 47.99 |
| PGSC0003DMT400010029 | Potato | nucleus | 50.52 | 47.39 |
| CDY46928 | Canola | cytosol | 16.41 | 46.69 |
| CDY68721 | Canola | nucleus | 16.54 | 46.21 |
| Bra027012.1-P | Field mustard | nucleus | 16.02 | 46.1 |
| KRG96010 | Soybean | cytosol | 4.01 | 38.27 |
Protein Annotations
| EnsemblPlants:Zm00001d004164_P001 | EnsemblPlants:Zm00001d004164_T001 | EnsemblPlantsGene:Zm00001d004164 | InterPro:RNaseH-like_sf | PANTHER:PTHR32166 | PANTHER:PTHR32166:SF53 |
| ProteinID:ONM18559.1 | SEG:seg | SUPFAM:SSF53098 | UniParc:UPI0008459AB3 | UniProt:A0A1D6EEA5 | MapMan:35.2 |
Description
No Description!
Coordinates
chr2:-:88283079..88285403
Molecular Weight (calculated)
83686.6 Da
IEP (calculated)
8.799
GRAVY (calculated)
-0.107
Length
774 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAEEGASAA ASAPPEAEAP AAGAMGAEAA AARKRYESLV QVRAKAIKGK GAWYWAHLEP VLVPPPASGQ QPKLARLRCT LCAATFSASN PSRTASEHLK
101: RGACPNFASP LAASAPVSTA PPLAIAAASS VVPISSFPPS SQRRHSTGGG GRKRHVLAAA YAAVDAASSH HMVVGEPAIY STPPTPPALP APRQVLSGGR
201: GDLTALARLE DSVKRLKSPV TSPGSMLPRH QAEAALALLA DWFLESSGTV SLAAAEHPKL KAFLRQVGLP ELSRADLTRG RLDARFAEAR ADAAARVRDA
301: RFFQLAADGW RDQVVTLAVN LPNGTSVFHH AVPMPAPPSS GYAEEVLLDA VSSVAASADV RHCAGIVADR FGSKALRDLE SKHPWMVNLS CQAHCLARLA
401: KDLVRELPVV HSAATNCAKM AAYFNATRAV RALLQRHQVQ ELGHAGLLRV AAPPSTGDNE TSAVFAMLDD VLTCARPLQL SVLEEPFKLL CIDDSTAREI
501: VDMVHSAAFW AEVEAAHSLV KMITDMVKEM ETERPLVGQC LPLWEDLRGK VRGWCRKFNV DEAIAMSVLE RRFRRSYHPA WSAAFILDPL YLIKDVSGRY
601: LPPFKYLTPE HEKDVDRLIT RLVSPEEAHL AMMELMKWRS EGLDPLYAQA VQVRQPDPTT GKMKIANKQS SRLVWETCLS EFKSLGKVAV RLIFLHATAR
701: GFRCTPTMAR WLTAPGTSSR GIARAQRLVF VVANSKLERK DLRNDDDRDA ELLMEGDDDM LTDPTTAIVV PSSV
101: RGACPNFASP LAASAPVSTA PPLAIAAASS VVPISSFPPS SQRRHSTGGG GRKRHVLAAA YAAVDAASSH HMVVGEPAIY STPPTPPALP APRQVLSGGR
201: GDLTALARLE DSVKRLKSPV TSPGSMLPRH QAEAALALLA DWFLESSGTV SLAAAEHPKL KAFLRQVGLP ELSRADLTRG RLDARFAEAR ADAAARVRDA
301: RFFQLAADGW RDQVVTLAVN LPNGTSVFHH AVPMPAPPSS GYAEEVLLDA VSSVAASADV RHCAGIVADR FGSKALRDLE SKHPWMVNLS CQAHCLARLA
401: KDLVRELPVV HSAATNCAKM AAYFNATRAV RALLQRHQVQ ELGHAGLLRV AAPPSTGDNE TSAVFAMLDD VLTCARPLQL SVLEEPFKLL CIDDSTAREI
501: VDMVHSAAFW AEVEAAHSLV KMITDMVKEM ETERPLVGQC LPLWEDLRGK VRGWCRKFNV DEAIAMSVLE RRFRRSYHPA WSAAFILDPL YLIKDVSGRY
601: LPPFKYLTPE HEKDVDRLIT RLVSPEEAHL AMMELMKWRS EGLDPLYAQA VQVRQPDPTT GKMKIANKQS SRLVWETCLS EFKSLGKVAV RLIFLHATAR
701: GFRCTPTMAR WLTAPGTSSR GIARAQRLVF VVANSKLERK DLRNDDDRDA ELLMEGDDDM LTDPTTAIVV PSSV
001: MATTNAHTAT QQTPPPPPPP PPAPAPPAMD GLTTDELTAK ALNKRYEGLM TVRTKAVKGK GAWYWTHLEP ILVRNTDTGL PKAVKLRCSL CDAVFSASNP
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62870.1); Has 173 Blast hits to 170 proteins in 34 species: Archae - 0; Bacteria - 4; Metazoa - 25; Fungi - 8; Plants - 123; Viruses - 7; Other Eukaryotes - 6 (so /.../NCBI BLink). [Source:TAIR;Acc:AT1G12380]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.