Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26560 | Canola | nucleus | 97.72 | 97.72 |
| Bra016775.1-P | Field mustard | nucleus | 86.21 | 85.75 |
| Bra019761.1-P | Field mustard | nucleus | 85.81 | 84.68 |
| AT1G12380.1 | Thale cress | cytosol, nucleus, plastid | 89.69 | 84.49 |
| Bra027012.1-P | Field mustard | nucleus | 23.43 | 65.06 |
| KRH04039 | Soybean | nucleus | 65.86 | 64.99 |
| KRH57308 | Soybean | nucleus | 65.6 | 64.9 |
| KRH28018 | Soybean | nucleus | 63.45 | 64.84 |
| VIT_02s0241g00050.t01 | Wine grape | nucleus | 66.93 | 64.6 |
| KRH77421 | Soybean | cytosol | 64.66 | 64.4 |
| Solyc08g079550.1.1 | Tomato | nucleus | 67.34 | 61.27 |
| PGSC0003DMT400010029 | Potato | nucleus | 66.93 | 60.61 |
| GSMUA_Achr2P12300_001 | Banana | nucleus | 53.55 | 57.89 |
| GSMUA_Achr2P03190_001 | Banana | nucleus | 41.63 | 57.27 |
| GSMUA_Achr9P20710_001 | Banana | cytosol | 49.8 | 55.19 |
| GSMUA_Achr7P16500_001 | Banana | plastid | 41.9 | 54.43 |
| Os04t0261400-01 | Rice | cytosol | 52.21 | 50.65 |
| Zm00001d015889_P001 | Maize | nucleus | 53.28 | 50.19 |
| Os02t0450000-01 | Rice | extracellular | 54.35 | 50.12 |
| Zm00001d004164_P001 | Maize | cytosol | 50.74 | 48.97 |
| Zm00001d025091_P001 | Maize | nucleus | 50.07 | 48.32 |
| Zm00001d053254_P001 | Maize | nucleus | 51.54 | 48.06 |
| TraesCS2B01G073600.1 | Wheat | cytosol | 51.14 | 47.51 |
| TraesCS2A01G059900.1 | Wheat | cytosol | 51.0 | 47.39 |
| TraesCSU01G024900.1 | Wheat | nucleus | 50.87 | 47.03 |
Protein Annotations
| EnsemblPlants:Bra026973.1 | EnsemblPlants:Bra026973.1-P | EnsemblPlantsGene:Bra026973 | InterPro:DUF659 | InterPro:RNaseH-like_sf | PANTHER:PTHR32166 |
| PANTHER:PTHR32166:SF50 | PFAM:PF04937 | SEG:seg | SUPFAM:SSF53098 | UniParc:UPI0002542890 | UniProt:M4EDW3 |
| MapMan:35.2 | : | : | : | : | : |
Description
AT1G62870 (E=0.0) | unknown protein
Coordinates
chrA09:+:34544603..34546846
Molecular Weight (calculated)
83297.9 Da
IEP (calculated)
8.475
GRAVY (calculated)
-0.318
Length
747 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTTNAPTPP PIDGLTTDEL TTKALNKRYE GLMTVRTKAV KGKGAWYWTH LEPILVRNTD TNLPKAVKLR CSLCDAVFSA SNPSRTASEH LKRGTCPNFN
101: SSVNVNVNPS PSSSSSSPSH HRKRNSSGAA VPSRLNHVTP ITVVDPSRFC VEYSAPPPPP HLMLSGGKDD LGPLAMLEDS VKKLKSPKPS HTQSLTRSEI
201: ESALSSLSDW VFESCGSVSL SGLEHPKFRA FLTQVGLPII SKRDFAKTRL DVKYEEAKSE SESRIRDAMF LQIASDGWKS GEGLVNLVVN LPNGTSLYRR
301: AVPVNGVVPS NYAEEVLLET VKGICGNSPQ RCVGIVSDKF KTKALRSLES QHQWMVNLSC QFQGLNSLIK DFVKELPLFK SVSQNCVRLA EFVNNTAQIR
401: NAHCKYQLQE HGEAIMLRLP LSCSSSGGSS KACFLEPLFN LLEDVLSSAR AIQMVMHDDA CKAVLIEDHG AREVREMVGD QGFWNEVEAV HALIKLVKEM
501: ARRIEEEKLL VGQCLPLWEE LRAKVKDWDS KFNVGEGLVE KLVERRFKKS YHPAWAAAFI LDPLYLIRDS TGKYLPPFKC LTPEQEKDVD KLITRLVSRD
601: EAHIALMELM KWRTEGLDPM YARAVQMKER DPVSGKMRIA NPQSSRLVWE TYLSEFRSLG KVAVRLIFLH ATTCGFKCNS SLLKWVNSHG RSHAAIDRAQ
701: KLIFISANSK FERRDFSNEE DRDAELLAMA NGDDNLLNDV LVDTSSV
101: SSVNVNVNPS PSSSSSSPSH HRKRNSSGAA VPSRLNHVTP ITVVDPSRFC VEYSAPPPPP HLMLSGGKDD LGPLAMLEDS VKKLKSPKPS HTQSLTRSEI
201: ESALSSLSDW VFESCGSVSL SGLEHPKFRA FLTQVGLPII SKRDFAKTRL DVKYEEAKSE SESRIRDAMF LQIASDGWKS GEGLVNLVVN LPNGTSLYRR
301: AVPVNGVVPS NYAEEVLLET VKGICGNSPQ RCVGIVSDKF KTKALRSLES QHQWMVNLSC QFQGLNSLIK DFVKELPLFK SVSQNCVRLA EFVNNTAQIR
401: NAHCKYQLQE HGEAIMLRLP LSCSSSGGSS KACFLEPLFN LLEDVLSSAR AIQMVMHDDA CKAVLIEDHG AREVREMVGD QGFWNEVEAV HALIKLVKEM
501: ARRIEEEKLL VGQCLPLWEE LRAKVKDWDS KFNVGEGLVE KLVERRFKKS YHPAWAAAFI LDPLYLIRDS TGKYLPPFKC LTPEQEKDVD KLITRLVSRD
601: EAHIALMELM KWRTEGLDPM YARAVQMKER DPVSGKMRIA NPQSSRLVWE TYLSEFRSLG KVAVRLIFLH ATTCGFKCNS SLLKWVNSHG RSHAAIDRAQ
701: KLIFISANSK FERRDFSNEE DRDAELLAMA NGDDNLLNDV LVDTSSV
001: MATTNAHTAT QQTPPPPPPP PPAPAPPAMD GLTTDELTAK ALNKRYEGLM TVRTKAVKGK GAWYWTHLEP ILVRNTDTGL PKAVKLRCSL CDAVFSASNP
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62870.1); Has 173 Blast hits to 170 proteins in 34 species: Archae - 0; Bacteria - 4; Metazoa - 25; Fungi - 8; Plants - 123; Viruses - 7; Other Eukaryotes - 6 (so /.../NCBI BLink). [Source:TAIR;Acc:AT1G12380]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.