Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026973.1-P | Field mustard | nucleus | 84.49 | 89.69 |
| CDY26560 | Canola | nucleus | 84.36 | 89.56 |
| CDY15994 | Canola | nucleus | 84.11 | 88.23 |
| CDX98069 | Canola | nucleus | 81.59 | 86.85 |
| CDY21048 | Canola | nucleus | 81.46 | 86.02 |
| Bra016775.1-P | Field mustard | nucleus | 81.34 | 85.89 |
| CDY30075 | Canola | nucleus | 82.22 | 85.56 |
| CDY31263 | Canola | nucleus | 81.34 | 85.54 |
| Bra019761.1-P | Field mustard | nucleus | 81.59 | 85.47 |
| AT1G62870.1 | Thale cress | cytosol | 77.05 | 80.18 |
| VIT_02s0241g00050.t01 | Wine grape | nucleus | 64.44 | 66.02 |
| KRH28018 | Soybean | nucleus | 60.66 | 65.8 |
| KRH04039 | Soybean | nucleus | 62.8 | 65.79 |
| KRH57308 | Soybean | nucleus | 62.42 | 65.56 |
| KRH77421 | Soybean | cytosol | 61.92 | 65.47 |
| Solyc08g079550.1.1 | Tomato | nucleus | 64.06 | 61.88 |
| PGSC0003DMT400010029 | Potato | nucleus | 63.56 | 61.09 |
| GSMUA_Achr2P12300_001 | Banana | nucleus | 51.83 | 59.48 |
| GSMUA_Achr2P03190_001 | Banana | nucleus | 39.34 | 57.46 |
| GSMUA_Achr9P20710_001 | Banana | cytosol | 47.67 | 56.08 |
| GSMUA_Achr7P16500_001 | Banana | plastid | 40.35 | 55.65 |
| Os02t0450000-01 | Rice | extracellular | 52.46 | 51.36 |
| Zm00001d015889_P001 | Maize | nucleus | 51.32 | 51.32 |
| Os04t0261400-01 | Rice | cytosol | 49.68 | 51.17 |
| Zm00001d004164_P001 | Maize | cytosol | 48.68 | 49.87 |
| Zm00001d025091_P001 | Maize | nucleus | 48.17 | 49.35 |
| TraesCS2B01G073600.1 | Wheat | cytosol | 49.31 | 48.63 |
| Zm00001d053254_P001 | Maize | nucleus | 48.93 | 48.44 |
| TraesCS2A01G059900.1 | Wheat | cytosol | 48.93 | 48.26 |
| TraesCSU01G024900.1 | Wheat | nucleus | 48.93 | 48.02 |
Protein Annotations
| ArrayExpress:AT1G12380 | EnsemblPlants:AT1G12380.1 | EnsemblPlantsGene:AT1G12380 | EntrezGene:837793 | GO:GO:0008150 | InterPro:RNaseH-like_sf |
| PANTHER:PTHR32166 | PANTHER:PTHR32166:SF50 | PO:PO:0000293 | ProteinID:AEE28873.1 | ProteinID:OAP13365.1 | RefSeq:AT1G12380 |
| RefSeq:AT1G12380-TAIR-G | RefSeq:NP_172700.1 | SEG:seg | SUPFAM:SSF53098 | TAIR:AT1G12380 | TAIR:AT1G12380.1 |
| Unigene:At.42078 | UniParc:UPI0000162D3E | UniProt:A0A178W786 | UniProt:F4IC79 | MapMan:35.2 | : |
Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62870.1); Has 173 Blast hits to 170 proteins in 34 species: Archae - 0; Bacteria - 4; Metazoa - 25; Fungi - 8; Plants - 123; Viruses - 7; Other Eukaryotes - 6 (so /.../NCBI BLink). [Source:TAIR;Acc:AT1G12380]
Coordinates
chr1:-:4214258..4217412
Molecular Weight (calculated)
88376.8 Da
IEP (calculated)
8.305
GRAVY (calculated)
-0.376
Length
793 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTNAHTAT QQTPPPPPPP PPAPAPPAMD GLTTDELTAK ALNKRYEGLM TVRTKAVKGK GAWYWTHLEP ILVRNTDTGL PKAVKLRCSL CDAVFSASNP
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.