Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P03190_001 | Banana | nucleus | 63.2 | 78.45 |
| GSMUA_Achr2P12300_001 | Banana | nucleus | 55.34 | 53.98 |
| KRH28018 | Soybean | nucleus | 56.82 | 52.39 |
| VIT_02s0241g00050.t01 | Wine grape | nucleus | 59.5 | 51.81 |
| VIT_16s0022g01740.t01 | Wine grape | nucleus | 58.46 | 51.71 |
| KRG92459 | Soybean | cytosol, nucleus | 52.97 | 51.44 |
| KRH57308 | Soybean | nucleus | 57.57 | 51.39 |
| KRH77421 | Soybean | cytosol | 57.12 | 51.33 |
| KRH04039 | Soybean | nucleus | 57.27 | 50.99 |
| KRH34341 | Soybean | cytosol, nucleus | 53.56 | 50.56 |
| KRH38730 | Soybean | cytosol | 56.97 | 50.33 |
| CDX98069 | Canola | nucleus | 55.34 | 50.07 |
| CDY30075 | Canola | nucleus | 56.38 | 49.87 |
| CDY26560 | Canola | nucleus | 55.19 | 49.8 |
| Bra026973.1-P | Field mustard | nucleus | 55.19 | 49.8 |
| CDY31263 | Canola | nucleus | 55.49 | 49.6 |
| PGSC0003DMT400079650 | Potato | cytosol, nucleus, plastid | 55.49 | 49.54 |
| Solyc03g007180.1.1 | Tomato | nucleus | 55.49 | 49.54 |
| Bra019761.1-P | Field mustard | nucleus | 55.49 | 49.41 |
| CDY21048 | Canola | nucleus | 55.04 | 49.4 |
| Bra016775.1-P | Field mustard | nucleus | 54.9 | 49.27 |
| KRH09233 | Soybean | nucleus | 54.45 | 49.26 |
| AT1G62870.1 | Thale cress | cytosol | 55.49 | 49.08 |
| CDY15994 | Canola | nucleus | 54.9 | 48.94 |
| GSMUA_Achr7P16500_001 | Banana | plastid | 40.95 | 48.0 |
| AT1G12380.1 | Thale cress | cytosol, nucleus, plastid | 56.08 | 47.67 |
| Os04t0261400-01 | Rice | cytosol | 54.3 | 47.53 |
| Solyc08g079550.1.1 | Tomato | nucleus | 57.42 | 47.14 |
| PGSC0003DMT400010029 | Potato | nucleus | 57.12 | 46.67 |
| Os02t0450000-01 | Rice | extracellular | 55.49 | 46.17 |
| Zm00001d004164_P001 | Maize | cytosol | 52.82 | 45.99 |
| Zm00001d025091_P001 | Maize | nucleus | 52.67 | 45.87 |
| Zm00001d015889_P001 | Maize | nucleus | 53.41 | 45.4 |
| TraesCS2A01G059900.1 | Wheat | cytosol | 52.52 | 44.03 |
| TraesCS2B01G073600.1 | Wheat | cytosol | 52.37 | 43.91 |
| Zm00001d053254_P001 | Maize | nucleus | 51.78 | 43.57 |
| TraesCSU01G024900.1 | Wheat | nucleus | 52.23 | 43.56 |
| KRG96010 | Soybean | cytosol | 4.6 | 38.27 |
| Bra027012.1-P | Field mustard | nucleus | 14.39 | 36.06 |
| CDY68721 | Canola | nucleus | 14.54 | 35.38 |
| CDY46928 | Canola | cytosol | 14.1 | 34.93 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P20710_001 | EnsemblPlants:GSMUA_Achr9T20710_001 | EnsemblPlantsGene:GSMUA_Achr9G20710_001 | InterPro:RNaseH-like_sf | PANTHER:PTHR32166 | PANTHER:PTHR32166:SF50 |
| SEG:seg | SUPFAM:SSF53098 | UniParc:UPI0002956B25 | UniProt:M0U230 | MapMan:35.2 | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G20710_001]
Coordinates
chr9:+:25075082..25077232
Molecular Weight (calculated)
74149.8 Da
IEP (calculated)
6.986
GRAVY (calculated)
-0.148
Length
674 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAGAQESVG GAGAGEDVTV RAARKRFERL LAVRCKAMKG KGAWYWAHLE PVMVADAGSG NPAVAKLRCS LCAALFSASN PSRTASEHLK RGACPNFSSP
101: SSATPTPSLA AASAAVDPDL VALARLEDSV KKLKSPLASP AAALPKPQAD AALTLLADWL LEYGGAVSPS ALDHPKFQSF LNQVGLSSIS PCQLVLSHLE
201: ARYLEVLSDS EDRIRDAAFF QLASDGWKSS ATSSEHTLVS FVANLPNGST LFHRSLLTTG GAPSDYAEEV LWDVVARLCG GLVDRCAGII ADRFNKKALL
301: NLESRNQRMV NLSCQLQAFN SLIKDFAHQL PLFAKVSANC LKLANFVNNQ SQVRSIFLKY QLEEHGHSRL LRSHCSTGLA VVEDVTEFAR PIQMAVLDED
401: YKVVCLEEPS AREMAELIQD GGFWTELEAV HSLVSLVKAM ARDIEMERPL IGQCLPLWDE LRSKLGDWRT KYGIDGGLVD NVIDQRFKKN YHPAWSAAFV
501: LDPLFLIKDT SGKYLPPFKC LSPEQDKDVD KLIMRLVSPE EAHVALMELM KWRSEGLDPL YAQAVQVKQH DPSTGKMRNA NPQSRRLVWE TCLTEFKCLQ
601: KVAVRLIFLH ATSGELKHNS TLIRWMCTHA QSRAAQKMAF LTVHSKIGRR DFLSDEEKDA ELFNMAENDD ASAA
101: SSATPTPSLA AASAAVDPDL VALARLEDSV KKLKSPLASP AAALPKPQAD AALTLLADWL LEYGGAVSPS ALDHPKFQSF LNQVGLSSIS PCQLVLSHLE
201: ARYLEVLSDS EDRIRDAAFF QLASDGWKSS ATSSEHTLVS FVANLPNGST LFHRSLLTTG GAPSDYAEEV LWDVVARLCG GLVDRCAGII ADRFNKKALL
301: NLESRNQRMV NLSCQLQAFN SLIKDFAHQL PLFAKVSANC LKLANFVNNQ SQVRSIFLKY QLEEHGHSRL LRSHCSTGLA VVEDVTEFAR PIQMAVLDED
401: YKVVCLEEPS AREMAELIQD GGFWTELEAV HSLVSLVKAM ARDIEMERPL IGQCLPLWDE LRSKLGDWRT KYGIDGGLVD NVIDQRFKKN YHPAWSAAFV
501: LDPLFLIKDT SGKYLPPFKC LSPEQDKDVD KLIMRLVSPE EAHVALMELM KWRSEGLDPL YAQAVQVKQH DPSTGKMRNA NPQSRRLVWE TCLTEFKCLQ
601: KVAVRLIFLH ATSGELKHNS TLIRWMCTHA QSRAAQKMAF LTVHSKIGRR DFLSDEEKDA ELFNMAENDD ASAA
001: MATTNAHTAT QQTPPPPPPP PPAPAPPAMD GLTTDELTAK ALNKRYEGLM TVRTKAVKGK GAWYWTHLEP ILVRNTDTGL PKAVKLRCSL CDAVFSASNP
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62870.1); Has 173 Blast hits to 170 proteins in 34 species: Archae - 0; Bacteria - 4; Metazoa - 25; Fungi - 8; Plants - 123; Viruses - 7; Other Eukaryotes - 6 (so /.../NCBI BLink). [Source:TAIR;Acc:AT1G12380]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.