Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46928 | Canola | cytosol | 92.78 | 94.49 |
| Bra027012.1-P | Field mustard | nucleus | 87.73 | 90.33 |
| AT1G62870.1 | Thale cress | cytosol | 74.37 | 27.03 |
| CDY21048 | Canola | nucleus | 62.82 | 23.17 |
| CDY26560 | Canola | nucleus | 62.45 | 23.16 |
| CDY15994 | Canola | nucleus | 63.18 | 23.15 |
| CDX98069 | Canola | nucleus | 62.09 | 23.09 |
| CDY31263 | Canola | nucleus | 62.45 | 22.94 |
| CDY30075 | Canola | nucleus | 61.37 | 22.31 |
| GSMUA_Achr7P16500_001 | Banana | plastid | 46.21 | 22.26 |
| VIT_02s0241g00050.t01 | Wine grape | nucleus | 60.29 | 21.58 |
| KRH77421 | Soybean | cytosol | 56.32 | 20.8 |
| KRH28018 | Soybean | nucleus | 54.51 | 20.66 |
| KRH57308 | Soybean | nucleus | 55.6 | 20.4 |
| GSMUA_Achr2P03190_001 | Banana | nucleus | 39.71 | 20.26 |
| KRH04039 | Soybean | nucleus | 54.87 | 20.08 |
| Solyc08g079550.1.1 | Tomato | nucleus | 58.48 | 19.73 |
| PGSC0003DMT400010029 | Potato | nucleus | 58.12 | 19.52 |
| GSMUA_Achr2P12300_001 | Banana | nucleus | 44.77 | 17.95 |
| Os02t0450000-01 | Rice | extracellular | 51.26 | 17.53 |
| Zm00001d015889_P001 | Maize | nucleus | 49.82 | 17.4 |
| Zm00001d053254_P001 | Maize | nucleus | 49.82 | 17.23 |
| Zm00001d025091_P001 | Maize | nucleus | 47.65 | 17.05 |
| TraesCS2A01G059900.1 | Wheat | cytosol | 48.01 | 16.54 |
| Zm00001d004164_P001 | Maize | cytosol | 46.21 | 16.54 |
| Os04t0261400-01 | Rice | cytosol | 44.77 | 16.1 |
| TraesCSU01G024900.1 | Wheat | nucleus | 46.93 | 16.09 |
| TraesCS2B01G073600.1 | Wheat | cytosol | 46.21 | 15.92 |
| GSMUA_Achr9P20710_001 | Banana | cytosol | 35.38 | 14.54 |
Protein Annotations
| EnsemblPlants:CDY68721 | EnsemblPlantsGene:GSBRNA2T00077109001 | PANTHER:PTHR32166 | PANTHER:PTHR32166:SF50 | ProteinID:CDY68721 | ProteinID:CDY68721.1 |
| SEG:seg | UniParc:UPI0004EE2759 | UniProt:A0A078JSX6 | MapMan:35.2 | : | : |
Description
BnaCnng60220DBnaCnng60220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JSX6]
Coordinates
chrLK037847:+:2175..4685
Molecular Weight (calculated)
29923.7 Da
IEP (calculated)
9.935
GRAVY (calculated)
-0.450
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTTTNAAQS QSPQPSSEEL ASKALQKRYE GLMTVRTKAI KGKGAWYWSH LEPILLHNTD TNLPKAVKLR CSLCDAVFSA SNPSRTASEH LKRGTCPNFN
101: SLPKPISTIS PPHPPPPPPP SSRKRNSSGG SSVEAPSPLN HLPPGSYHVT PLTVVDPARY CGRDLHFPAA QGHLMLSGGK DDLGPLAMLE NSVKKLKSPT
201: QTQKLSRAQI DSALASLSDW VFESCGSVSL SSLEHPKLRD FLTQVGLPII SRRDFVAGSN DLETGFGIHK YKSPITM
101: SLPKPISTIS PPHPPPPPPP SSRKRNSSGG SSVEAPSPLN HLPPGSYHVT PLTVVDPARY CGRDLHFPAA QGHLMLSGGK DDLGPLAMLE NSVKKLKSPT
201: QTQKLSRAQI DSALASLSDW VFESCGSVSL SSLEHPKLRD FLTQVGLPII SRRDFVAGSN DLETGFGIHK YKSPITM
001: MATTNAHTAT QQTPPPPPPP PPAPAPPAMD GLTTDELTAK ALNKRYEGLM TVRTKAVKGK GAWYWTHLEP ILVRNTDTGL PKAVKLRCSL CDAVFSASNP
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62870.1); Has 173 Blast hits to 170 proteins in 34 species: Archae - 0; Bacteria - 4; Metazoa - 25; Fungi - 8; Plants - 123; Viruses - 7; Other Eukaryotes - 6 (so /.../NCBI BLink). [Source:TAIR;Acc:AT1G12380]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.