CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57308	Soybean	nucleus	96.17	96.42
KRH28018	Soybean	nucleus	73.58	76.2
KRH77421	Soybean	cytosol	72.92	73.6
VIT_02s0241g00050.t01	Wine grape	nucleus	73.05	71.45
KRG96010	Soybean	cytosol	7.27	67.9
Bra026973.1-P	Field mustard	nucleus	64.99	65.86
CDY26560	Canola	nucleus	64.73	65.6
Solyc08g079550.1.1	Tomato	nucleus	70.67	65.16
AT1G62870.1	Thale cress	cytosol	65.39	64.96
PGSC0003DMT400010029	Potato	nucleus	70.41	64.61
CDX98069	Canola	nucleus	63.14	64.16
CDY15994	Canola	nucleus	64.07	64.15
CDY21048	Canola	nucleus	63.54	64.05
Bra016775.1-P	Field mustard	nucleus	63.41	63.91
CDY31263	Canola	nucleus	63.41	63.66
CDY30075	Canola	nucleus	63.28	62.86
AT1G12380.1	Thale cress	cytosol, nucleus, plastid	65.79	62.8
GSMUA_Achr2P12300_001	Banana	nucleus	57.07	62.52
Bra019761.1-P	Field mustard	nucleus	62.48	62.48
KRH38730	Soybean	cytosol	60.9	60.42
GSMUA_Achr2P03190_001	Banana	nucleus	43.33	60.41
KRG92459	Soybean	cytosol, nucleus	54.03	58.93
KRH34341	Soybean	cytosol, nucleus	55.09	58.4
KRH09233	Soybean	nucleus	57.46	58.39
GSMUA_Achr9P20710_001	Banana	cytosol	50.99	57.27
CDY46928	Canola	cytosol	20.08	55.88
Bra027012.1-P	Field mustard	nucleus	19.82	55.76
GSMUA_Achr7P16500_001	Banana	plastid	42.27	55.65
CDY68721	Canola	nucleus	20.08	54.87
Os04t0261400-01	Rice	cytosol	53.9	52.99
Os02t0450000-01	Rice	extracellular	56.14	52.47
Zm00001d015889_P001	Maize	nucleus	53.37	50.95
Zm00001d004164_P001	Maize	cytosol	51.92	50.78
Zm00001d025091_P001	Maize	nucleus	51.39	50.26
Zm00001d053254_P001	Maize	nucleus	51.92	49.06
TraesCS2B01G073600.1	Wheat	cytosol	51.92	48.88
TraesCSU01G024900.1	Wheat	nucleus	52.05	48.76
TraesCS2A01G059900.1	Wheat	cytosol	51.65	48.63

Protein Annotations

EMBL:ACUP02010374	EnsemblPlants:KRH04039	EnsemblPlantsGene:GLYMA_17G135600	EntrezGene:100785216	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:RNaseH-like_sf	ncoils:Coil	PANTHER:PTHR32166	PANTHER:PTHR32166:SF50	ProteinID:KRH04039
ProteinID:KRH04039.1	SEG:seg	SUPFAM:SSF53098	UniParc:UPI000233F0C4	UniProt:I1MUV0	MapMan:35.2

Description

hypothetical protein

Coordinates

chr17:-:10923856..10927001

Molecular Weight (calculated)

84879.5 Da

IEP (calculated)

8.500

GRAVY (calculated)

-0.294

Length

757 amino acids

Sequence
(BLAST)

001: MAATNAGVAA ADSAASSDEA AAKTAQKRYE GLLMVRNKAI KGKGAWYWTH LEPLLVHNTE TGLPKAVKLR CTLCDAVFSA SNPSRTASEH LKRGTCPNFN
101: SAAKPISSVS PVLVSSSTSP PSASPFNNRK RTTTSPSASG SGSGSLYHAP SRFGIGLIPH QQQQHLKLSG GKEDLGALAM LEDSVKKLKS PKTSPGPTLS
201: KAQIDSAIKF LGDWVYESCG AVSFSSLEHP KFRAFLAQVG LPPVFPREFT GTRLDARFEE AKVESEARIR DAMFFQIASD GWKWKRERES YYDYDDSNSG
301: LVNLSVNLPN GTSLYRRALF VTASAPSKYA EEVMWETITG ICGNLVQQCV GIVADRFKAK ALKNLENQNH WMVNLTCQYQ GFNTLIKDFA KELPLFRTVV
401: QNCLKLANLF NYTSQVRNSF HKYQLQEYGH TWLLRVPAHE FEFGLPVCAM MEDTLSSVRA LQLVLMDEPF KMVAIEDQGA REVGDMIRDV GFWNDLEAVH
501: GLVKLVKDMA QEIEAERPLV GQCLPLWDEL RAKVKDWCSK FHIAEGVVEK LVERRFKKNY HPAWAAAYIL DPLYLVRDTS GKYLPPFKYL TPEQEKDVDR
601: LITRLVARDE AHIALMELMK WRTEGLDPVY AQAVQMKERD PVTGKMRIVN PQSSRLVWET YLTEFKSLGK VAVRLIFLHA TSCGFKCNWS LWRWVCAQGH
701: HSRNALNKVQ KLIFIAAHSK LERRDFSSDQ DKDAELFTLA NGEDDVLNDV LVDTSSV

Best Arabidopsis Sequence Match ( AT1G62870.1 )
(BLAST)

001: MATTTNATTT ATQQQTQTQS PTQQPSAEEL ATKALQKRYE GLMMVRTKAV KGKGAWYWSH LEPILLHNTD TGFPKAVKLR CSLCDAVFSA SNPSRTASEH
101: LKRGTCPNFN SLPKPISTIS PSPPPPPSSS HRKRNSSAVE ALNHHHHHPH HHHQGSYNVT PLSVVDPSRF CGQFPVTQQP HLMLSGGKDD LGPLAMLEDS
201: VKKLKSPKTS QTRNLTKAQI DSALDSLSDW VFESCGSVSL SGLEHPKLRA FLTQVGLPII SRRDFVTGRL DLKYEDSRAE AESRIHDAMF FQIASDGWKF
301: DSSGENLVNL IVNLPNGTSL YRRAVFVNGA VPSNYAEEVL WETVRGICGN SPQRCVGIVS DRFMSKALRN LESQHQWMVN LSCQFQGFNS LIRDFVKELP
401: LFKSVSQSCS RLVNFVNSTA QIRNAVCKYQ LQEQGETRML HLPLDSSLFE PLYNLLEDVL SFARAIQLVM HDDVCKAVLM EDHMAREVGE MVGDVGFWNE
501: VEAVYLLLKL VKEMARRIEE ERPLVGQCLP LWDELRSKIK DWYAKFNVVE ERQVEKIVER RFKKSYHPAW AAAFILDPLY LIKDSSGKYL PPFKCLSPEQ
601: EKDVDKLITR LVSRDEAHIA MMELMKWRTE GLDPVYARAV QMKERDPVSG KMRIANPQSS RLVWETYLSE FRSLGRVAVR LIFLHATSCG FKCNSSVLRW
701: VNSNGRSRAA VDRAQKLIFI SANSKFERRD FSNEEERDAE LLAMANGEDD VLNDVLIDTS SV

Arabidopsis Description

F16P17.2 protein [Source:UniProtKB/TrEMBL;Acc:Q9LQ19]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.