Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d053254_P001 | Maize | nucleus | 80.58 | 79.78 |
| Os02t0450000-01 | Rice | extracellular | 80.58 | 78.89 |
| Zm00001d025091_P001 | Maize | nucleus | 61.79 | 63.31 |
| Zm00001d004164_P001 | Maize | cytosol | 61.79 | 63.31 |
| GSMUA_Achr2P03190_001 | Banana | nucleus | 40.48 | 59.12 |
| VIT_16s0022g01740.t01 | Wine grape | nucleus | 53.34 | 55.51 |
| VIT_02s0241g00050.t01 | Wine grape | nucleus | 53.09 | 54.39 |
| KRH57308 | Soybean | nucleus | 51.2 | 53.77 |
| KRH28018 | Soybean | nucleus | 49.56 | 53.76 |
| KRH77421 | Soybean | cytosol | 50.82 | 53.73 |
| KRG92459 | Soybean | cytosol, nucleus | 46.78 | 53.46 |
| CDY26560 | Canola | nucleus | 50.32 | 53.41 |
| GSMUA_Achr9P20710_001 | Banana | cytosol | 45.4 | 53.41 |
| KRH04039 | Soybean | nucleus | 50.95 | 53.37 |
| KRH34341 | Soybean | cytosol, nucleus | 48.05 | 53.36 |
| Bra026973.1-P | Field mustard | nucleus | 50.19 | 53.28 |
| CDX98069 | Canola | nucleus | 49.94 | 53.15 |
| Solyc03g007180.1.1 | Tomato | nucleus | 50.57 | 53.11 |
| CDY31263 | Canola | nucleus | 50.44 | 53.05 |
| Bra016775.1-P | Field mustard | nucleus | 50.06 | 52.86 |
| CDY21048 | Canola | nucleus | 50.06 | 52.86 |
| PGSC0003DMT400079650 | Potato | cytosol, nucleus, plastid | 50.32 | 52.85 |
| Bra019761.1-P | Field mustard | nucleus | 50.06 | 52.44 |
| CDY30075 | Canola | nucleus | 50.06 | 52.1 |
| CDY15994 | Canola | nucleus | 49.56 | 51.98 |
| AT1G62870.1 | Thale cress | cytosol | 49.94 | 51.97 |
| KRH09233 | Soybean | nucleus | 48.3 | 51.41 |
| AT1G12380.1 | Thale cress | cytosol, nucleus, plastid | 51.32 | 51.32 |
| Bra027012.1-P | Field mustard | nucleus | 17.4 | 51.3 |
| KRH38730 | Soybean | cytosol | 49.31 | 51.25 |
| CDY46928 | Canola | cytosol | 17.53 | 51.1 |
| CDY68721 | Canola | nucleus | 17.4 | 49.82 |
| Solyc08g079550.1.1 | Tomato | nucleus | 51.45 | 49.7 |
| PGSC0003DMT400010029 | Potato | nucleus | 51.2 | 49.21 |
| KRG96010 | Soybean | cytosol | 4.54 | 44.44 |
Protein Annotations
| EnsemblPlants:Zm00001d015889_P001 | EnsemblPlants:Zm00001d015889_T001 | EnsemblPlantsGene:Zm00001d015889 | EntrezGene:103626874 | InterPro:RNaseH-like_sf | PANTHER:PTHR32166 |
| PANTHER:PTHR32166:SF53 | ProteinID:AQK69732.1 | SEG:seg | SUPFAM:SSF53098 | UniParc:UPI0002213EC1 | UniProt:A0A096RC05 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5:+:129318041..129320422
Molecular Weight (calculated)
86974.9 Da
IEP (calculated)
8.063
GRAVY (calculated)
-0.259
Length
793 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTATAKEEE AAAAAAPAMV GEEAAARAAL KRYEALLTVR AKAVKGKGAW YWAHLEPVLV PPAETGMPPK AVKLRCALCS AVFSASNPSR TASEHLKRGT
101: CPNFASPPPG PAGASALQPA PTPTQQLALP SNSTASSPVP ISSIAPSSSH HHSNPHHHHH QQQQSGSRKR HSMPPAYTPA EPVSHHHHLV VVDPSLVYPS
201: ALPALPAPPP PHQSELVLSG GKGDFSALAM LEDSVKRLKS PKASPVTMMP KPQADAALAL LSDWFLESSP GVSLSAASHP KLRAFLRHVG LPDLQRADLA
301: GPRLDARFAE ARADATARVR DALFFQLAAD GWREQVVTLC VNLPNGTSVF HRAVPVPAMA PSDYAEELML EAVASVSASG SSSDLHRCAG IISDRFKSKA
401: LRDLEKKNYW MVNLSCQIHS FTRLVWDFAR ELSLFRSATA KSAKLAAFFN AEQTARSLLH KHQIQQLGHA SLLRVAHVPF NGNGRNYRAA FEMLEDILNS
501: AHPLHRAVQE DSYKLVCIDD SAAREIAEMV HSEAFWIEVD AVHSLVKLIF DMVREMEADR PLVGQCLPLW EELRSKVRDW CEKFNTDEGA ALNVLEKRFR
601: KSYHPAWSAA FILDPLYLVK DASGRYLPPF KCLTPDQEKD VDRLITRMVS REEAHLVLME LMKWRSDGLD PLYAQAVQVR QPDPSTGRMK VANKQSSRLV
701: WETCLSELKS LGKVAVRLIF LHATSRGFRC TPSMVRWLCA PGTMASGNDR AHRLVFVAAN SKLERRDFSS DEDKDAELLA EGDDDDVPGT VEP
101: CPNFASPPPG PAGASALQPA PTPTQQLALP SNSTASSPVP ISSIAPSSSH HHSNPHHHHH QQQQSGSRKR HSMPPAYTPA EPVSHHHHLV VVDPSLVYPS
201: ALPALPAPPP PHQSELVLSG GKGDFSALAM LEDSVKRLKS PKASPVTMMP KPQADAALAL LSDWFLESSP GVSLSAASHP KLRAFLRHVG LPDLQRADLA
301: GPRLDARFAE ARADATARVR DALFFQLAAD GWREQVVTLC VNLPNGTSVF HRAVPVPAMA PSDYAEELML EAVASVSASG SSSDLHRCAG IISDRFKSKA
401: LRDLEKKNYW MVNLSCQIHS FTRLVWDFAR ELSLFRSATA KSAKLAAFFN AEQTARSLLH KHQIQQLGHA SLLRVAHVPF NGNGRNYRAA FEMLEDILNS
501: AHPLHRAVQE DSYKLVCIDD SAAREIAEMV HSEAFWIEVD AVHSLVKLIF DMVREMEADR PLVGQCLPLW EELRSKVRDW CEKFNTDEGA ALNVLEKRFR
601: KSYHPAWSAA FILDPLYLVK DASGRYLPPF KCLTPDQEKD VDRLITRMVS REEAHLVLME LMKWRSDGLD PLYAQAVQVR QPDPSTGRMK VANKQSSRLV
701: WETCLSELKS LGKVAVRLIF LHATSRGFRC TPSMVRWLCA PGTMASGNDR AHRLVFVAAN SKLERRDFSS DEDKDAELLA EGDDDDVPGT VEP
001: MATTNAHTAT QQTPPPPPPP PPAPAPPAMD GLTTDELTAK ALNKRYEGLM TVRTKAVKGK GAWYWTHLEP ILVRNTDTGL PKAVKLRCSL CDAVFSASNP
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62870.1); Has 173 Blast hits to 170 proteins in 34 species: Archae - 0; Bacteria - 4; Metazoa - 25; Fungi - 8; Plants - 123; Viruses - 7; Other Eukaryotes - 6 (so /.../NCBI BLink). [Source:TAIR;Acc:AT1G12380]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.