Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400079650 | Potato | cytosol, nucleus, plastid | 98.01 | 98.01 |
| VIT_16s0022g01740.t01 | Wine grape | nucleus | 69.8 | 69.16 |
| KRG92459 | Soybean | cytosol, nucleus | 56.69 | 61.67 |
| KRH34341 | Soybean | cytosol, nucleus | 57.88 | 61.2 |
| KRH38730 | Soybean | cytosol | 61.59 | 60.94 |
| GSMUA_Achr2P12300_001 | Banana | nucleus | 53.91 | 58.9 |
| Solyc08g079550.1.1 | Tomato | nucleus | 63.58 | 58.47 |
| KRH09233 | Soybean | nucleus | 57.62 | 58.39 |
| GSMUA_Achr2P03190_001 | Banana | nucleus | 41.72 | 58.01 |
| GSMUA_Achr9P20710_001 | Banana | cytosol | 49.54 | 55.49 |
| GSMUA_Achr7P16500_001 | Banana | plastid | 40.66 | 53.39 |
| Os02t0450000-01 | Rice | extracellular | 54.44 | 50.74 |
| Zm00001d015889_P001 | Maize | nucleus | 53.11 | 50.57 |
| Zm00001d004164_P001 | Maize | cytosol | 51.13 | 49.87 |
| Os04t0261400-01 | Rice | cytosol | 50.86 | 49.87 |
| Zm00001d025091_P001 | Maize | nucleus | 50.46 | 49.22 |
| Zm00001d053254_P001 | Maize | nucleus | 51.92 | 48.94 |
| TraesCS2B01G073600.1 | Wheat | cytosol | 51.26 | 48.13 |
| TraesCS2A01G059900.1 | Wheat | cytosol | 50.73 | 47.64 |
| TraesCSU01G024900.1 | Wheat | nucleus | 50.86 | 47.52 |
Protein Annotations
| EnsemblPlants:Solyc03g007180.1.1 | EnsemblPlantsGene:Solyc03g007180.1 | InterPro:RNaseH-like_sf | PANTHER:PTHR32166 | PANTHER:PTHR32166:SF50 | SUPFAM:SSF53098 |
| UniParc:UPI0002767F68 | UniProt:K4BEE1 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr3:+:1755906..1758173
Molecular Weight (calculated)
84649.9 Da
IEP (calculated)
8.261
GRAVY (calculated)
-0.276
Length
755 amino acids
Sequence
(BLAST)
(BLAST)
001: MADINVNSVL TSGEDMAEKA LSKRYEGLVA VRTKAIKGKG AWYWAHLEPV LIQNPETNHP KAVKLKCTLC DAAFSASNPS RTATEHLKRG TCPNFGAVLR
101: PISQLPPLAS PTSQNNHRKR SSPQTGTCSN SQQFGVVNTS PRFCGEMGYS PLQTAQAIAT HTGLNQQHLM LSGGKEDLDA LAMLEDSVKR LKSLKSSPGP
201: ALNKDQVDSA FNLLADWFYE SCGTVTLSSL EHPKFKAFLN QVGLPQVSRK DFVGEKLDSK FDEARVESEA RIRDAAFFQV SSDGWGRDIC KYGEDTVIKF
301: IINLPNGTNV FHKAVYKGGL VPSEYAEEVL RETIKGLCGN VVQRCVGIVG DKYKSKALRN LELQNHWMVN LSCQLHGFIS LLKDFGRELP LFKIVTDNCL
401: KIANLFNSKS QIRNHFRKFR SHGVELAGLI RVPSADCNLS KNYGPVIAML EDILSYARIL QLIVLDDSYK VSCIEDPVAK EVAEMIQDVG FWNDVEAVHS
501: LVKLIKEMTD DIEVQRPLVG QCLLLWEELR AKVKDWCAKF SVAEGPIEKI IDTRFKKNYH PAWSAAFVLD PLYLVRDASG KYLPPFKRLT HDQEKDIDKL
601: ITRLVPREEA PTALMELMKW RSEGLDPLYA QAVQVKQRDP VTGRMKIANP QSSRLVWETC LKEFKSLGKV AVRLLFLQAT SCGFKCNWSF MRWVSLQGQS
701: RVGMDRAQRM IFIAAHAKLE KRDFSSDEEK DAEMLTTANG EDDMFNEVFV DAPSV
101: PISQLPPLAS PTSQNNHRKR SSPQTGTCSN SQQFGVVNTS PRFCGEMGYS PLQTAQAIAT HTGLNQQHLM LSGGKEDLDA LAMLEDSVKR LKSLKSSPGP
201: ALNKDQVDSA FNLLADWFYE SCGTVTLSSL EHPKFKAFLN QVGLPQVSRK DFVGEKLDSK FDEARVESEA RIRDAAFFQV SSDGWGRDIC KYGEDTVIKF
301: IINLPNGTNV FHKAVYKGGL VPSEYAEEVL RETIKGLCGN VVQRCVGIVG DKYKSKALRN LELQNHWMVN LSCQLHGFIS LLKDFGRELP LFKIVTDNCL
401: KIANLFNSKS QIRNHFRKFR SHGVELAGLI RVPSADCNLS KNYGPVIAML EDILSYARIL QLIVLDDSYK VSCIEDPVAK EVAEMIQDVG FWNDVEAVHS
501: LVKLIKEMTD DIEVQRPLVG QCLLLWEELR AKVKDWCAKF SVAEGPIEKI IDTRFKKNYH PAWSAAFVLD PLYLVRDASG KYLPPFKRLT HDQEKDIDKL
601: ITRLVPREEA PTALMELMKW RSEGLDPLYA QAVQVKQRDP VTGRMKIANP QSSRLVWETC LKEFKSLGKV AVRLLFLQAT SCGFKCNWSF MRWVSLQGQS
701: RVGMDRAQRM IFIAAHAKLE KRDFSSDEEK DAEMLTTANG EDDMFNEVFV DAPSV
001: MATTTNATTT ATQQQTQTQS PTQQPSAEEL ATKALQKRYE GLMMVRTKAV KGKGAWYWSH LEPILLHNTD TGFPKAVKLR CSLCDAVFSA SNPSRTASEH
101: LKRGTCPNFN SLPKPISTIS PSPPPPPSSS HRKRNSSAVE ALNHHHHHPH HHHQGSYNVT PLSVVDPSRF CGQFPVTQQP HLMLSGGKDD LGPLAMLEDS
201: VKKLKSPKTS QTRNLTKAQI DSALDSLSDW VFESCGSVSL SGLEHPKLRA FLTQVGLPII SRRDFVTGRL DLKYEDSRAE AESRIHDAMF FQIASDGWKF
301: DSSGENLVNL IVNLPNGTSL YRRAVFVNGA VPSNYAEEVL WETVRGICGN SPQRCVGIVS DRFMSKALRN LESQHQWMVN LSCQFQGFNS LIRDFVKELP
401: LFKSVSQSCS RLVNFVNSTA QIRNAVCKYQ LQEQGETRML HLPLDSSLFE PLYNLLEDVL SFARAIQLVM HDDVCKAVLM EDHMAREVGE MVGDVGFWNE
501: VEAVYLLLKL VKEMARRIEE ERPLVGQCLP LWDELRSKIK DWYAKFNVVE ERQVEKIVER RFKKSYHPAW AAAFILDPLY LIKDSSGKYL PPFKCLSPEQ
601: EKDVDKLITR LVSRDEAHIA MMELMKWRTE GLDPVYARAV QMKERDPVSG KMRIANPQSS RLVWETYLSE FRSLGRVAVR LIFLHATSCG FKCNSSVLRW
701: VNSNGRSRAA VDRAQKLIFI SANSKFERRD FSNEEERDAE LLAMANGEDD VLNDVLIDTS SV
101: LKRGTCPNFN SLPKPISTIS PSPPPPPSSS HRKRNSSAVE ALNHHHHHPH HHHQGSYNVT PLSVVDPSRF CGQFPVTQQP HLMLSGGKDD LGPLAMLEDS
201: VKKLKSPKTS QTRNLTKAQI DSALDSLSDW VFESCGSVSL SGLEHPKLRA FLTQVGLPII SRRDFVTGRL DLKYEDSRAE AESRIHDAMF FQIASDGWKF
301: DSSGENLVNL IVNLPNGTSL YRRAVFVNGA VPSNYAEEVL WETVRGICGN SPQRCVGIVS DRFMSKALRN LESQHQWMVN LSCQFQGFNS LIRDFVKELP
401: LFKSVSQSCS RLVNFVNSTA QIRNAVCKYQ LQEQGETRML HLPLDSSLFE PLYNLLEDVL SFARAIQLVM HDDVCKAVLM EDHMAREVGE MVGDVGFWNE
501: VEAVYLLLKL VKEMARRIEE ERPLVGQCLP LWDELRSKIK DWYAKFNVVE ERQVEKIVER RFKKSYHPAW AAAFILDPLY LIKDSSGKYL PPFKCLSPEQ
601: EKDVDKLITR LVSRDEAHIA MMELMKWRTE GLDPVYARAV QMKERDPVSG KMRIANPQSS RLVWETYLSE FRSLGRVAVR LIFLHATSCG FKCNSSVLRW
701: VNSNGRSRAA VDRAQKLIFI SANSKFERRD FSNEEERDAE LLAMANGEDD VLNDVLIDTS SV
Arabidopsis Description
F16P17.2 protein [Source:UniProtKB/TrEMBL;Acc:Q9LQ19]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.