Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98069 | Canola | nucleus | 95.38 | 96.91 |
| Bra026973.1-P | Field mustard | nucleus | 84.68 | 85.81 |
| Bra016775.1-P | Field mustard | nucleus | 82.83 | 83.49 |
| AT1G12380.1 | Thale cress | cytosol, nucleus, plastid | 85.47 | 81.59 |
| Bra027012.1-P | Field mustard | nucleus | 22.85 | 64.31 |
| KRH28018 | Soybean | nucleus | 61.82 | 64.02 |
| KRH77421 | Soybean | cytosol | 62.62 | 63.2 |
| KRH57308 | Soybean | nucleus | 63.01 | 63.18 |
| VIT_02s0241g00050.t01 | Wine grape | nucleus | 64.33 | 62.92 |
| KRH04039 | Soybean | nucleus | 62.48 | 62.48 |
| Solyc08g079550.1.1 | Tomato | nucleus | 63.67 | 58.71 |
| PGSC0003DMT400010029 | Potato | nucleus | 63.28 | 58.06 |
| GSMUA_Achr2P03190_001 | Banana | nucleus | 41.48 | 57.83 |
| GSMUA_Achr2P12300_001 | Banana | nucleus | 52.18 | 57.16 |
| GSMUA_Achr9P20710_001 | Banana | cytosol | 49.41 | 55.49 |
| GSMUA_Achr7P16500_001 | Banana | plastid | 40.42 | 53.22 |
| Os02t0450000-01 | Rice | extracellular | 53.76 | 50.25 |
| Zm00001d015889_P001 | Maize | nucleus | 52.44 | 50.06 |
| Os04t0261400-01 | Rice | cytosol | 50.46 | 49.61 |
| Zm00001d004164_P001 | Maize | cytosol | 49.67 | 48.58 |
| Zm00001d025091_P001 | Maize | nucleus | 49.14 | 48.06 |
| Zm00001d053254_P001 | Maize | nucleus | 49.93 | 47.19 |
| TraesCS2A01G059900.1 | Wheat | cytosol | 49.14 | 46.27 |
| TraesCS2B01G073600.1 | Wheat | cytosol | 49.14 | 46.27 |
| TraesCSU01G024900.1 | Wheat | nucleus | 49.14 | 46.04 |
Protein Annotations
| EnsemblPlants:Bra019761.1 | EnsemblPlants:Bra019761.1-P | EnsemblPlantsGene:Bra019761 | InterPro:RNaseH-like_sf | PANTHER:PTHR32166 | PANTHER:PTHR32166:SF50 |
| SEG:seg | SUPFAM:SSF53098 | UniParc:UPI000253ECEE | UniProt:M4DTB8 | MapMan:35.2 | : |
Description
AT1G12380 (E=0.0) | unknown protein
Coordinates
chrA06:+:4565179..4567452
Molecular Weight (calculated)
84224.8 Da
IEP (calculated)
8.402
GRAVY (calculated)
-0.320
Length
757 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTTNNNAPT AAQQQQPETT AMDGLTPEEL TAKALSKRYE GLMTVRNKAV KGKGAWYWTH LEPILVRNTD TALPKAVKLR CSLCDAVFSA SNPSRTASEH
101: LKRGTCPNFT SSSVSTPSSS SSPSHPHHHH RKRNSSGAAV PSRLSSPHPI TVVDPSRFCG GELQYSAAPP PPMLSGGRDD LVPLAMLEDS VKKLKSPKPS
201: HTQSLTRSQV DSALDSLSGW VYESCGSVSL SGLEHPKFRA FLTQVGLPTV SKRDFATTRL DLKYEEARVE SESRIRDAMF FQIASDGWDS NLVSLIVNLP
301: NGMSLYRKAV LVNGAVPSNY AEEVLLETVK GICGNSPQRC VGVVSDKFKN KALRSLEGRH QWMVNLSCQF QGVNSLVKDF VRELPLFKSV SQNCERLAKF
401: INSTAGIRNA HCKYQLREHG EAIMLRLPPL HCSSSGSSSK ACCYFEPLFN LLEDVLSSAR AIQLVMHDEA CKAVLMEVHM AREVAEMVGD GGFWNEVEAV
501: HALIKLVKEM ARRIEEDKLL VGQCLPLWDE LRAKIKDWDS KFNVGGGHVD EIVERRFKKC YHPAWAAAFI LDPLYLIRDS SGKYLPPFKC LSPEQEKDVD
601: KLITRLVSRD EAHIALMELM KWRTEGLDPM YARAVQMKER DPVSGKMRIA NPQSSRLVWE TYLSEFRSLG KVAVRLIFLH ATTCGFKCNS SLLKWVSSHG
701: RSHAAIDRAQ KLIFISANSK FERRDFSNEE DRDAELLAMA NGDDNLLNDV LVDTSSV
101: LKRGTCPNFT SSSVSTPSSS SSPSHPHHHH RKRNSSGAAV PSRLSSPHPI TVVDPSRFCG GELQYSAAPP PPMLSGGRDD LVPLAMLEDS VKKLKSPKPS
201: HTQSLTRSQV DSALDSLSGW VYESCGSVSL SGLEHPKFRA FLTQVGLPTV SKRDFATTRL DLKYEEARVE SESRIRDAMF FQIASDGWDS NLVSLIVNLP
301: NGMSLYRKAV LVNGAVPSNY AEEVLLETVK GICGNSPQRC VGVVSDKFKN KALRSLEGRH QWMVNLSCQF QGVNSLVKDF VRELPLFKSV SQNCERLAKF
401: INSTAGIRNA HCKYQLREHG EAIMLRLPPL HCSSSGSSSK ACCYFEPLFN LLEDVLSSAR AIQLVMHDEA CKAVLMEVHM AREVAEMVGD GGFWNEVEAV
501: HALIKLVKEM ARRIEEDKLL VGQCLPLWDE LRAKIKDWDS KFNVGGGHVD EIVERRFKKC YHPAWAAAFI LDPLYLIRDS SGKYLPPFKC LSPEQEKDVD
601: KLITRLVSRD EAHIALMELM KWRTEGLDPM YARAVQMKER DPVSGKMRIA NPQSSRLVWE TYLSEFRSLG KVAVRLIFLH ATTCGFKCNS SLLKWVSSHG
701: RSHAAIDRAQ KLIFISANSK FERRDFSNEE DRDAELLAMA NGDDNLLNDV LVDTSSV
001: MATTNAHTAT QQTPPPPPPP PPAPAPPAMD GLTTDELTAK ALNKRYEGLM TVRTKAVKGK GAWYWTHLEP ILVRNTDTGL PKAVKLRCSL CDAVFSASNP
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62870.1); Has 173 Blast hits to 170 proteins in 34 species: Archae - 0; Bacteria - 4; Metazoa - 25; Fungi - 8; Plants - 123; Viruses - 7; Other Eukaryotes - 6 (so /.../NCBI BLink). [Source:TAIR;Acc:AT1G12380]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.