CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04039	Soybean	nucleus	96.42	96.17
KRH28018	Soybean	nucleus	74.04	76.47
KRH77421	Soybean	cytosol	72.98	73.47
VIT_02s0241g00050.t01	Wine grape	nucleus	73.11	71.32
KRG96010	Soybean	cytosol	7.55	70.37
Bra026973.1-P	Field mustard	nucleus	64.9	65.6
AT1G62870.1	Thale cress	cytosol	65.96	65.35
CDY26560	Canola	nucleus	64.64	65.33
Solyc08g079550.1.1	Tomato	nucleus	70.2	64.56
CDX98069	Canola	nucleus	63.58	64.43
CDY21048	Canola	nucleus	63.71	64.05
PGSC0003DMT400010029	Potato	nucleus	69.93	64.0
Bra016775.1-P	Field mustard	nucleus	63.58	63.91
CDY15994	Canola	nucleus	63.97	63.89
CDY31263	Canola	nucleus	63.71	63.79
CDY30075	Canola	nucleus	63.71	63.12
Bra019761.1-P	Field mustard	nucleus	63.18	63.01
AT1G12380.1	Thale cress	cytosol, nucleus, plastid	65.56	62.42
GSMUA_Achr2P12300_001	Banana	nucleus	57.09	62.37
GSMUA_Achr2P03190_001	Banana	nucleus	44.11	61.33
KRH38730	Soybean	cytosol	60.93	60.29
KRG92459	Soybean	cytosol, nucleus	54.04	58.79
KRH09233	Soybean	nucleus	57.75	58.52
KRH34341	Soybean	cytosol, nucleus	55.1	58.26
GSMUA_Achr9P20710_001	Banana	cytosol	51.39	57.57
CDY46928	Canola	cytosol	20.4	56.62
Bra027012.1-P	Field mustard	nucleus	20.13	56.51
GSMUA_Achr7P16500_001	Banana	plastid	42.65	56.0
CDY68721	Canola	nucleus	20.4	55.6
Os04t0261400-01	Rice	cytosol	54.04	52.99
Os02t0450000-01	Rice	extracellular	56.56	52.72
Zm00001d015889_P001	Maize	nucleus	53.77	51.2
Zm00001d004164_P001	Maize	cytosol	52.19	50.9
Zm00001d025091_P001	Maize	nucleus	51.66	50.39
Zm00001d053254_P001	Maize	nucleus	52.45	49.44
TraesCS2B01G073600.1	Wheat	cytosol	52.05	48.88
TraesCSU01G024900.1	Wheat	nucleus	52.19	48.76
TraesCS2A01G059900.1	Wheat	cytosol	51.79	48.63

Protein Annotations

EMBL:ACUP02002824	EnsemblPlants:KRH57308	EnsemblPlantsGene:GLYMA_05G053200	EntrezGene:100804722	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:RNaseH-like_sf	PANTHER:PTHR32166	PANTHER:PTHR32166:SF50	ProteinID:KRH57308	ProteinID:KRH57308.1
SEG:seg	SUPFAM:SSF53098	UniParc:UPI000233A115	UniProt:A0A0R0JQV8	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr5:-:4792602..4795716

Molecular Weight (calculated)

84523.1 Da

IEP (calculated)

8.206

GRAVY (calculated)

-0.278

Length

755 amino acids

Sequence
(BLAST)

001: MAATNAGLAA ADSASADEAA AKTAQKRYEG LLMVRNKAIK GKGAWYWTHL EPLLVHNTET GLPKAVKLRC TLCDAVFSAS NPSRTASEHL KRGTCPNFNS
101: AAKPISSVSP VLLPSSTSPP PSASPFNHRK RTTTSPSASG SGSGSLYHAP SRFGSGLIPQ QQHLMLSGGK DDLGALAMLE DSVKKLKSPK TSPGLALSKA
201: QIDSAIEFLG DWVYESCGAV SFSSLEHPKF RAFLAQVGLP AVFPREFTGT RLDARFEEAK VESEARIRDA MFFQIASDGW KWKRERESYY EDDSNSNSGL
301: VNLSVNLPNG TSLYRRALFV TASAPSKYAE EVMWETITSI CGNLVQQCVG IVADRFKAKA LKNLENQNHW MVNLTCQYQG FNTLIKDFAK ELPLFRTVVQ
401: NCLKLANLFN YTSQVRNSFH KYQLQEYGHT WLLRVPAHEF EFGPVCAMME DTLSSVRALQ LVLMDEPFKM VAIEDQGARE VGDMIRDVGF WNDLEAVHGL
501: VKLVKDMAQE IEAERPLVGQ CLPLWDELRA KVKDWCSKFH IAEGVVDKLV EKRFKKNYHP AWAAAYILDP LYLVRDTSGK YLPPFKYLTP EQEKDVDRLI
601: TRLVARDEAH IALMELMKWR TEGLDPVYAQ AVQMKERDPV TGKMRIVNPQ SSRLVWETYL TEFKSLGKVA VRLIFLHATS CGFKCNWSLW RWVCAQGHHS
701: RTALNKVQKL IFIAAHSKLE RRDFSSDQDK DAELFTLANG EDDVLNDVLV DTSSV

Best Arabidopsis Sequence Match ( AT1G62870.1 )
(BLAST)

001: MATTTNATTT ATQQQTQTQS PTQQPSAEEL ATKALQKRYE GLMMVRTKAV KGKGAWYWSH LEPILLHNTD TGFPKAVKLR CSLCDAVFSA SNPSRTASEH
101: LKRGTCPNFN SLPKPISTIS PSPPPPPSSS HRKRNSSAVE ALNHHHHHPH HHHQGSYNVT PLSVVDPSRF CGQFPVTQQP HLMLSGGKDD LGPLAMLEDS
201: VKKLKSPKTS QTRNLTKAQI DSALDSLSDW VFESCGSVSL SGLEHPKLRA FLTQVGLPII SRRDFVTGRL DLKYEDSRAE AESRIHDAMF FQIASDGWKF
301: DSSGENLVNL IVNLPNGTSL YRRAVFVNGA VPSNYAEEVL WETVRGICGN SPQRCVGIVS DRFMSKALRN LESQHQWMVN LSCQFQGFNS LIRDFVKELP
401: LFKSVSQSCS RLVNFVNSTA QIRNAVCKYQ LQEQGETRML HLPLDSSLFE PLYNLLEDVL SFARAIQLVM HDDVCKAVLM EDHMAREVGE MVGDVGFWNE
501: VEAVYLLLKL VKEMARRIEE ERPLVGQCLP LWDELRSKIK DWYAKFNVVE ERQVEKIVER RFKKSYHPAW AAAFILDPLY LIKDSSGKYL PPFKCLSPEQ
601: EKDVDKLITR LVSRDEAHIA MMELMKWRTE GLDPVYARAV QMKERDPVSG KMRIANPQSS RLVWETYLSE FRSLGRVAVR LIFLHATSCG FKCNSSVLRW
701: VNSNGRSRAA VDRAQKLIFI SANSKFERRD FSNEEERDAE LLAMANGEDD VLNDVLIDTS SV

Arabidopsis Description

F16P17.2 protein [Source:UniProtKB/TrEMBL;Acc:Q9LQ19]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.