Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G12380.1 | Thale cress | cytosol, nucleus, plastid | 80.18 | 77.05 |
| CDY46928 | Canola | cytosol | 26.64 | 74.63 |
| CDY68721 | Canola | nucleus | 27.03 | 74.37 |
| Bra027012.1-P | Field mustard | nucleus | 25.85 | 73.23 |
| KRH28018 | Soybean | nucleus | 64.04 | 66.76 |
| KRH77421 | Soybean | cytosol | 64.96 | 66.0 |
| KRH57308 | Soybean | nucleus | 65.35 | 65.96 |
| VIT_02s0241g00050.t01 | Wine grape | nucleus | 66.67 | 65.63 |
| KRH04039 | Soybean | nucleus | 64.96 | 65.39 |
| Solyc08g079550.1.1 | Tomato | nucleus | 65.22 | 60.54 |
| PGSC0003DMT400010029 | Potato | nucleus | 64.83 | 59.88 |
| GSMUA_Achr2P12300_001 | Banana | nucleus | 53.02 | 58.47 |
| GSMUA_Achr2P03190_001 | Banana | nucleus | 41.34 | 58.01 |
| GSMUA_Achr9P20710_001 | Banana | cytosol | 49.08 | 55.49 |
| GSMUA_Achr7P16500_001 | Banana | plastid | 41.86 | 55.48 |
| Os02t0450000-01 | Rice | extracellular | 54.46 | 51.23 |
| Zm00001d015889_P001 | Maize | nucleus | 51.97 | 49.94 |
| Os04t0261400-01 | Rice | cytosol | 49.74 | 49.22 |
| Zm00001d004164_P001 | Maize | cytosol | 49.34 | 48.58 |
| Zm00001d025091_P001 | Maize | nucleus | 49.34 | 48.58 |
| Zm00001d053254_P001 | Maize | nucleus | 50.0 | 47.57 |
| TraesCS2A01G059900.1 | Wheat | cytosol | 49.34 | 46.77 |
| TraesCS2B01G073600.1 | Wheat | cytosol | 49.21 | 46.64 |
| TraesCSU01G024900.1 | Wheat | nucleus | 49.08 | 46.29 |
Protein Annotations
| ArrayExpress:AT1G62870 | EMBL:AK226723 | EnsemblPlants:AT1G62870.1 | EnsemblPlantsGene:AT1G62870 | EntrezGene:842588 | InterPro:RNaseH-like_sf |
| PANTHER:PTHR32166 | PANTHER:PTHR32166:SF50 | ProteinID:AAF75799.1 | ProteinID:AEE34015.1 | RefSeq:AT1G62870 | RefSeq:AT1G62870-TAIR-G |
| RefSeq:NP_176475.2 | SEG:seg | SUPFAM:SSF53098 | TAIR:AT1G62870 | TAIR:AT1G62870.1 | Unigene:At.36209 |
| UniParc:UPI00000A3CB0 | UniProt:Q9LQ19 | MapMan:35.2 | : | : | : |
Description
F16P17.2 protein [Source:UniProtKB/TrEMBL;Acc:Q9LQ19]
Coordinates
chr1:-:23283912..23286797
Molecular Weight (calculated)
86100.0 Da
IEP (calculated)
8.186
GRAVY (calculated)
-0.373
Length
762 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTTNATTT ATQQQTQTQS PTQQPSAEEL ATKALQKRYE GLMMVRTKAV KGKGAWYWSH LEPILLHNTD TGFPKAVKLR CSLCDAVFSA SNPSRTASEH
101: LKRGTCPNFN SLPKPISTIS PSPPPPPSSS HRKRNSSAVE ALNHHHHHPH HHHQGSYNVT PLSVVDPSRF CGQFPVTQQP HLMLSGGKDD LGPLAMLEDS
201: VKKLKSPKTS QTRNLTKAQI DSALDSLSDW VFESCGSVSL SGLEHPKLRA FLTQVGLPII SRRDFVTGRL DLKYEDSRAE AESRIHDAMF FQIASDGWKF
301: DSSGENLVNL IVNLPNGTSL YRRAVFVNGA VPSNYAEEVL WETVRGICGN SPQRCVGIVS DRFMSKALRN LESQHQWMVN LSCQFQGFNS LIRDFVKELP
401: LFKSVSQSCS RLVNFVNSTA QIRNAVCKYQ LQEQGETRML HLPLDSSLFE PLYNLLEDVL SFARAIQLVM HDDVCKAVLM EDHMAREVGE MVGDVGFWNE
501: VEAVYLLLKL VKEMARRIEE ERPLVGQCLP LWDELRSKIK DWYAKFNVVE ERQVEKIVER RFKKSYHPAW AAAFILDPLY LIKDSSGKYL PPFKCLSPEQ
601: EKDVDKLITR LVSRDEAHIA MMELMKWRTE GLDPVYARAV QMKERDPVSG KMRIANPQSS RLVWETYLSE FRSLGRVAVR LIFLHATSCG FKCNSSVLRW
701: VNSNGRSRAA VDRAQKLIFI SANSKFERRD FSNEEERDAE LLAMANGEDD VLNDVLIDTS SV
101: LKRGTCPNFN SLPKPISTIS PSPPPPPSSS HRKRNSSAVE ALNHHHHHPH HHHQGSYNVT PLSVVDPSRF CGQFPVTQQP HLMLSGGKDD LGPLAMLEDS
201: VKKLKSPKTS QTRNLTKAQI DSALDSLSDW VFESCGSVSL SGLEHPKLRA FLTQVGLPII SRRDFVTGRL DLKYEDSRAE AESRIHDAMF FQIASDGWKF
301: DSSGENLVNL IVNLPNGTSL YRRAVFVNGA VPSNYAEEVL WETVRGICGN SPQRCVGIVS DRFMSKALRN LESQHQWMVN LSCQFQGFNS LIRDFVKELP
401: LFKSVSQSCS RLVNFVNSTA QIRNAVCKYQ LQEQGETRML HLPLDSSLFE PLYNLLEDVL SFARAIQLVM HDDVCKAVLM EDHMAREVGE MVGDVGFWNE
501: VEAVYLLLKL VKEMARRIEE ERPLVGQCLP LWDELRSKIK DWYAKFNVVE ERQVEKIVER RFKKSYHPAW AAAFILDPLY LIKDSSGKYL PPFKCLSPEQ
601: EKDVDKLITR LVSRDEAHIA MMELMKWRTE GLDPVYARAV QMKERDPVSG KMRIANPQSS RLVWETYLSE FRSLGRVAVR LIFLHATSCG FKCNSSVLRW
701: VNSNGRSRAA VDRAQKLIFI SANSKFERRD FSNEEERDAE LLAMANGEDD VLNDVLIDTS SV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.