Factsheet for Solyc09g009520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006847	Potato	golgi, mitochondrion, peroxisome, plastid	94.41	94.41
Solyc09g009500.2.1	Tomato	plastid	72.61	73.78
VIT_08s0007g03440.t01	Wine grape	plastid	69.95	69.76
Solyc09g009550.2.1	Tomato	endoplasmic reticulum	59.84	64.66
Solyc09g009510.2.1	Tomato	plastid	65.16	64.47
Solyc09g009540.2.1	Tomato	endoplasmic reticulum	60.9	64.15
KRH30836	Soybean	mitochondrion, plastid	63.56	63.56
Solyc09g009530.2.1	Tomato	plastid	58.78	63.51
KRH67906	Soybean	golgi, plastid	61.97	62.97
KRH32735	Soybean	endoplasmic reticulum	62.77	62.93
KRG96190	Soybean	extracellular, plasma membrane	46.54	60.76
AT2G36290.1	Thale cress	plastid	58.51	60.44
Bra005286.1-P	Field mustard	plastid	57.71	59.78
CDX75055	Canola	plastid	57.71	59.78
AT1G74300.1	Thale cress	extracellular	54.52	59.25
CDX84140	Canola	plastid	56.65	58.68
GSMUA_Achr11P...	Banana	mitochondrion	56.91	57.68
HORVU6Hr1G033060.1	Barley	plastid	54.52	55.56
AT1G74290.1	Thale cress	mitochondrion	54.79	55.53
AT1G74280.1	Thale cress	golgi, mitochondrion	54.79	55.38
Os04t0411800-01	Rice	endoplasmic reticulum, golgi	50.53	55.23
Os02t0532300-02	Rice	plasma membrane	53.72	54.3
CDX73073	Canola	endoplasmic reticulum, golgi, mitochondrion, vacuole	51.33	53.61
CDX96530	Canola	endoplasmic reticulum, golgi	51.6	53.44
Bra015923.1-P	Field mustard	endoplasmic reticulum, golgi	51.6	53.44
TraesCS6B01G191000.1	Wheat	plastid	52.13	53.12
TraesCS2D01G292100.1	Wheat	plastid	50.8	53.06
Zm00001d016696_P002	Maize	extracellular, plasma membrane	51.33	53.02
TraesCS2B01G310800.1	Wheat	endoplasmic reticulum, golgi, plastid	50.53	52.78
EES05176	Sorghum	plastid	51.33	52.59
TraesCS6D01G152300.1	Wheat	plastid	51.86	52.56
TraesCS2A01G294400.1	Wheat	plastid	50.27	52.5
TraesCS6A01G160400.1	Wheat	plastid	51.6	52.29
VIT_03s0017g02230.t01	Wine grape	cytosol	21.81	51.9
Solyc05g055290.2.1	Tomato	extracellular, golgi	47.61	51.59
Solyc11g007040.1.1	Tomato	plastid	55.32	51.36
EES10737	Sorghum	endoplasmic reticulum, golgi, plastid, vacuole	51.6	51.19
HORVU2Hr1G072830.4	Barley	endoplasmic reticulum, golgi	50.0	50.54
Solyc07g024080.1.1	Tomato	cytosol, endoplasmic reticulum, plasma membrane	11.44	50.0
OQU81513	Sorghum	cytosol	27.13	49.76
EES04288	Sorghum	extracellular	46.54	48.61
Solyc07g024090.1.1	Tomato	cytosol	15.69	47.97
TraesCS1D01G269000.1	Wheat	plastid	46.81	47.96
Solyc11g067260.1.1	Tomato	plastid	49.2	47.93
Solyc11g007030.1.1	Tomato	extracellular, mitochondrion	53.46	47.74
Os04t0412000-01	Rice	plasma membrane	49.73	47.7
HORVU1Hr1G074380.4	Barley	golgi	44.95	46.05
Zm00001d003800_P011	Maize	extracellular	48.4	44.5
TraesCS1A01G268900.1	Wheat	plastid	46.54	43.32
Solyc01g009500.2.1	Tomato	cytosol	35.37	38.66
Solyc06g074330.2.1	Tomato	cytosol	35.37	38.66
Solyc01g009480.2.1	Tomato	cytosol	32.71	38.08
Solyc06g074340.2.1	Tomato	endoplasmic reticulum, golgi	31.91	33.99
EER89183	Sorghum	cytosol	23.94	31.58
Solyc09g007380.2.1	Tomato	cytosol	25.53	18.25
Solyc11g072440.1.1	Tomato	cytosol, peroxisome, plastid	22.61	15.71

Protein Annotations

EnsemblPlants:Solyc09g009520.2.1	EnsemblPlantsGene:Solyc09g009520.2	Gene3D:3.40.50.1820	GO:GO:0003674	GO:GO:0003824	GO:GO:0016787
InterPro:AB_hydrolase	InterPro:AB_hydrolase_1	InterPro:IPR029058	PANTHER:PTHR10992	PANTHER:PTHR10992:SF740	PFAM:PF12697
SEG:seg	SUPFAM:SSF53474	TMHMM:TMhelix	UniParc:UPI000276C6D5	UniProt:K4CQY1	MapMan:35.2

Description

No Description!

Coordinates

chr9:-:2929991..2932883

Molecular Weight (calculated)

42224.7 Da

IEP (calculated)

9.455

GRAVY (calculated)

-0.301

Length

376 amino acids

Sequence
(BLAST)

001: MSKKISSASA RSHTRKNKQM KSSIPLHSGM FGKIVAVVFV GFVAYAYRAM QPPPSKICGA PDGPPVTSPR VKLSDGRYLA YKEHGIPRDQ AKHKIVFIHG
101: YDSNRHDAVV ATGLSPEVIE NLGVYIVSID RPGYGESDPN PKRTVKSLAF DVQELADQLG LGSKFYVIGF SMGGQAVWTL LKYIPHRLAG AALLAPVTNY
201: WWPNFPANLS KEAFNQQLPQ DIWNLRVAHY LPWLTYSWNT QKFFPACSAA AYNPGALSSQ DLELMPKYRA NRDLYAQVRQ QGLHESLYRD LMIGFGTWEF
301: DPMDLENPFH NKEGSVQLWQ GDEDKLVPVT LQRYIAQRQP WIQYHEIAGA GHMFPVLDGM ADKIVKALLI GEKNMT

Best Arabidopsis Sequence Match ( AT2G36290.1 )
(BLAST)

001: MATGSTTDSA RSPSSGVLQK LLLLFSVCIA TSTYKAIQPP PSKLCGSPDG PSITGPRIKL RDGRQLAYKE HGVPRDEATH KIIVVHGSDS CRHDNAFAAL
101: LSPDIKEGLG VYMVSFDRPG YAESDPDPNR TPKSLALDIE ELADQLSLGS KFYVIGYSMG GQATWACLKY IPHRLAGVTL VAPVVNYWWK NFPSEISTEA
201: FNQQGRNDQW AVRVAHYAPW LTHWWNSQSW FPGSSVVARN LGMLSKADKE IMFKLGAARS QHEAQIRQQG THETLHRDMI VGFGTWEFDP MELENLFPNN
301: EGSVHLWQGD DDVLVPVTLQ RYIAKKLPWI HYHEIPGAGH LFPFAPGMVN NIVKTLLTND GVKK

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SJM9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.