Factsheet for TraesCS4D01G270500.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G271300.1	Wheat	extracellular	97.64	97.64
TraesCS4A01G034200.1	Wheat	extracellular	96.85	96.85
HORVU4Hr1G072440.1	Barley	extracellular	91.73	91.73
TraesCS5D01G527700.1	Wheat	extracellular	91.34	90.98
TraesCS5D01G527800.1	Wheat	extracellular	88.98	88.28
TraesCS4D01G271800.1	Wheat	extracellular	80.31	81.93
TraesCS4D01G271900.1	Wheat	extracellular	80.71	81.03
TraesCS4D01G271700.1	Wheat	extracellular	80.31	80.63
Zm00001d035101_P001	Maize	extracellular	58.66	70.28
Os03t0155900-01	Rice	extracellular	68.9	70.28
Os03t0156000-00	Rice	extracellular	68.9	70.28
Zm00001d035104_P001	Maize	cytosol, extracellular, plastid	58.27	69.81
Os03t0156300-00	Rice	extracellular	64.96	68.75
Zm00001d035111_P001	Maize	extracellular	68.5	68.5
Zm00001d035102_P001	Maize	extracellular	68.11	68.11
Zm00001d035108_P001	Maize	extracellular	68.11	68.11
Zm00001d035109_P001	Maize	extracellular	67.32	67.32
Zm00001d035100_P001	Maize	extracellular	67.72	67.19
Zm00001d035112_P001	Maize	extracellular	53.54	66.67
EES13271	Sorghum	extracellular	66.54	65.25
EES13270	Sorghum	extracellular	65.75	64.23
EES14433	Sorghum	plastid	66.54	60.79
TraesCS5D01G535500.1	Wheat	extracellular	59.45	59.22
TraesCS3D01G313100.1	Wheat	extracellular	57.87	59.04
TraesCS3D01G313300.1	Wheat	extracellular	56.3	58.61
TraesCS3D01G175800.1	Wheat	extracellular	57.87	58.57
TraesCS3D01G313400.1	Wheat	extracellular	57.09	58.23
TraesCS3D01G313200.1	Wheat	extracellular	56.69	57.83
CDY66063	Canola	cytosol, extracellular, plastid	36.61	56.36
KRH51669	Soybean	extracellular	55.12	55.56
TraesCS3D01G176000.1	Wheat	extracellular	53.54	53.33
Bra016473.1-P	Field mustard	extracellular	33.07	49.41
TraesCS1D01G203100.1	Wheat	extracellular	46.46	45.56
Solyc07g063210.2.1	Tomato	extracellular	45.67	45.31
VIT_19s0014g02910.t01	Wine grape	extracellular	44.09	43.58
TraesCS3D01G030100.1	Wheat	extracellular	34.65	42.93
TraesCS7D01G314100.1	Wheat	extracellular	42.52	41.86
AT3G15370.2	Thale cress	extracellular	45.28	40.78
TraesCS7D01G019600.1	Wheat	plastid	40.55	39.31
PGSC0003DMT400032334	Potato	cytosol, nucleus, vacuole	45.28	25.84

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.1	InterPro:Expan_Lol_pI	InterPro:Expansin	InterPro:Expansin/allergen_DPBB_dom
InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0005575	GO:GO:0005576	GO:GO:0008150	GO:GO:0009664
GO:GO:0009987	GO:GO:0016043	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908
PFAM:PF01357	PFAM:PF03330	PRINTS:PR01225	PRINTS:PR01226	PFscan:PS50842	PFscan:PS50843
PANTHER:PTHR31867	PANTHER:PTHR31867:SF14	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF49590
SUPFAM:SSF50685	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS4D01G270500	EnsemblPlants:TraesCS4D01G270500.1	:	:

Description

No Description!

Coordinates

chr4D:+:441255882..441256780

Molecular Weight (calculated)

27747.9 Da

IEP (calculated)

7.605

GRAVY (calculated)

0.039

Length

254 amino acids

Sequence
(BLAST)

001: MAAGMRFLQL FAAVLAFSFV PAKSDYWHQA YATFYGGADG SETMGGACGY DNLYAAGYGL NNAALSTVLF NNGLSCGQCY LITCDTSKSN MCKPGTSITV
101: SATNLCPPNW ALPNDNGGWC NPPREHFDMS QPAWENLAIY RAGIVPVLYQ RVACQRQGGL RFTISGFNFF ELVLVTNIAM SGSIRSMSVK GTNTAWITMS
201: QNWGANWQCL AGLKGQALSF AITSSGGQYK VFQDVVPAWW LFGQTFSTWQ QFDY

Best Arabidopsis Sequence Match ( AT1G20190.1 )
(BLAST)

001: MSKSLAGLAV LAALFIAVDA FRPSGLTNGH ATFYGGSDAS GTMGGACGYG DLYSAGYGTM TAALSTALFN DGASCGECYR ITCDHAADSR WCLKGASVVI
101: TATNFCPPNF ALPNNNGGWC NPPLKHFDMA QPAWEKIGIY RGGIVPVVFQ RVSCYKKGGV RFRINGRDYF ELVNIQNVGG AGSIKSVSIK GSKTGWLAMS
201: RNWGANWQSN AYLDGQALSF SITTTDGATR VFLNVVPSSW SFGQIYSSNV QF

Arabidopsis Description

EXPA11Expansin-A11 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.