Factsheet for TraesCS6D01G272600.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, peroxisome

Predictor Summary:

nucleus 1
plastid 1
vacuole 1
mitochondrion 1
endoplasmic reticulum 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G321200.1	Wheat	endoplasmic reticulum, peroxisome, vacuole	98.02	97.84
TraesCS6A01G291200.1	Wheat	vacuole	96.94	97.82
HORVU6Hr1G072910.3	Barley	cytosol, endoplasmic reticulum, peroxisome	95.32	95.66
EES05585	Sorghum	endoplasmic reticulum, peroxisome, plastid, vacuole	80.72	80.43
Os02t0730700-02	Rice	cytosol, peroxisome, vacuole	82.16	79.58
Zm00001d051761_P001	Maize	endoplasmic reticulum, peroxisome, vacuole	78.38	75.0
GSMUA_Achr6P30620_001	Banana	cytosol, nucleus, vacuole	56.76	57.8
TraesCS7D01G211000.1	Wheat	endoplasmic reticulum, peroxisome, vacuole	50.99	56.04
VIT_17s0000g03880.t01	Wine grape	extracellular, plasma membrane, vacuole	43.42	50.95
PGSC0003DMT400010418	Potato	cytosol, nucleus, vacuole	45.59	45.34
Solyc06g069190.2.1	Tomato	cytosol, nucleus, vacuole	45.59	45.02
Bra032272.1-P	Field mustard	cytosol	42.34	43.6
CDY60079	Canola	cytosol	42.34	43.6
KRH39216	Soybean	nucleus, peroxisome, vacuole	43.96	42.66
CDY04326	Canola	cytosol, endoplasmic reticulum, vacuole	43.06	42.45
KRH48461	Soybean	nucleus, peroxisome, vacuole	43.6	42.16
AT1G49050.1	Thale cress	cytosol, plastid, vacuole	43.96	41.85
TraesCS4D01G094200.1	Wheat	plasma membrane, vacuole	27.93	37.62
TraesCS5D01G128800.1	Wheat	plasma membrane, vacuole	29.37	36.14
TraesCS4D01G094300.1	Wheat	plasma membrane, vacuole	23.96	33.76
TraesCS4D01G100300.1	Wheat	extracellular, plasma membrane	24.86	33.25
TraesCS4D01G100200.1	Wheat	extracellular, golgi	22.16	32.63
TraesCS4D01G364900.1	Wheat	unclear	22.52	30.49
TraesCS4D01G365000.1	Wheat	plasma membrane, vacuole	22.34	30.24
TraesCS6D01G089100.1	Wheat	cytosol, peroxisome, vacuole	14.41	27.12
TraesCS5D01G532900.3	Wheat	extracellular	12.07	23.34
TraesCS2D01G273200.1	Wheat	extracellular, plasma membrane, vacuole	20.0	22.75
TraesCS7D01G390900.1	Wheat	vacuole	20.0	22.65
TraesCS3D01G311700.2	Wheat	plasma membrane	19.64	21.8
TraesCS4D01G072000.1	Wheat	cytosol, mitochondrion, plastid, vacuole	16.58	21.55
TraesCS5D01G533000.1	Wheat	plastid	17.12	20.79
TraesCS2D01G065800.1	Wheat	vacuole	18.38	20.0
TraesCS6D01G282400.2	Wheat	plasma membrane	18.38	19.88
TraesCS5D01G340300.1	Wheat	extracellular, plasma membrane, vacuole	17.84	19.04
TraesCS7D01G524300.1	Wheat	plastid	17.66	18.7
TraesCS2D01G192000.1	Wheat	plasma membrane, plastid, vacuole	17.48	15.35

Protein Annotations

MapMan:19.4.3.1	Gene3D:2.40.70.10	InterPro:Aspartic_peptidase_A1	InterPro:Aspartic_peptidase_AS	GO:GO:0003674	GO:GO:0003824
GO:GO:0004190	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538
InterPro:IPR021109	InterPro:IPR033121	InterPro:Nucellin	InterPro:PEPTIDASE_A1	PFAM:PF14541	PFAM:PF14543
PRINTS:PR00792	ScanProsite:PS00141	PFscan:PS51767	PANTHER:PTHR13683	PANTHER:PTHR13683:SF334	InterPro:Peptidase_aspartic_dom_sf
SUPFAM:SSF50630	InterPro:TAXi_C	InterPro:TAXi_N	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6D01G272600	EnsemblPlants:TraesCS6D01G272600.1
TIGR:cd05475	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:381351341..381355300

Molecular Weight (calculated)

60831.3 Da

IEP (calculated)

6.639

GRAVY (calculated)

-0.357

Length

555 amino acids

Sequence
(BLAST)

001: MPIPPPPPPP PPPEPPQLHG VVIITLPPPD QPSKGKTITA FTYTDEPGAG APALPPHRGP PMATAGREAR RSRRAVSRRA GAMVLVLGAL ALAAYYSFYS
101: DVAVQFLGME EEEAQKERNE TKSFLFQLYP KAHQGRALRE FGDIKLAAKR VDDGGGRKVT KKLDVKGATS AGTNSTVLLP IKGNVFPDGQ YYTSIFVGNP
201: PRPYFLDVDT GSDLTWIQCD APCTNCAQGP HPLYKPAKEK IVPPRDLLCQ ELQGDQNYCE TCKQCDYEIE YADRSSSMGV LAKDDMHLIA TNGGKEKLDF
301: VFGCAYDQQG QLLSSPAKTD GILGLSSAAI SLPSQLASKG IISNIFGHCI TRETNGGGYM FLGDDYVPRW GMTWAPIRGG PDNLYHTEAQ KVNYGDQELS
401: MHGHAGNSVQ VIFDSGSSYT YLPEEMYKNL IDAIKDDSPN FVQDSSDTTL PLCWKADFSV RSFFKPLNLH FGRRWFVVPK TFTIVPDDYL IISEKGNVCL
501: GLLNGTEINH GSTIIVGDVS LRGKLVVHDN ERRQIGWANS ECTKAQSQKG FPFFL

Best Arabidopsis Sequence Match ( AT1G49050.1 )
(BLAST)

001: MEPDLHDQQQ QQRVHSVVII TLPPSDDPSQ GKTISAFTLT DHDYPLEIPP EDNPNPSFQP DPLHRNQQSR LLFSDLSMNS PRLVLGLLGI SLLAVAFYAS
101: VFPNSVQMFR VSPDERNRDD DDNLRETASF VFPVYHKLRA REFHERILEE DLGLENENFV ESMDLELVNP VKVNDVLSTS AGSIDSSTTI FPVGGNVYPD
201: GLYYTRILVG KPEDGQYYHL DIDTGSELTW IQCDAPCTSC AKGANQLYKP RKDNLVRSSE AFCVEVQRNQ LTEHCENCHQ CDYEIEYADH SYSMGVLTKD
301: KFHLKLHNGS LAESDIVFGC GYDQQGLLLN TLLKTDGILG LSRAKISLPS QLASRGIISN VVGHCLASDL NGEGYIFMGS DLVPSHGMTW VPMLHDSRLD
401: AYQMQVTKMS YGQGMLSLDG ENGRVGKVLF DTGSSYTYFP NQAYSQLVTS LQEVSGLELT RDDSDETLPI CWRAKTNFPF SSLSDVKKFF RPITLQIGSK
501: WLIISRKLLI QPEDYLIISN KGNVCLGILD GSSVHDGSTI ILGDISMRGH LIVYDNVKRR IGWMKSDCVR PREIDHNVPF FQG

Arabidopsis Description

APCB1Aspartyl protease APCB1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9A8]
SUBAcon: [plastid,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.