Factsheet for VIT_01s0127g00490.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0127g00490.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60440.1	VIT_01s0127g00490.t01	AT1G60440.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G60440.1	Thale cress	cytosol	62.29	68.15
CDY40427	Canola	cytosol	48.21	67.79
KRG99350	Soybean	cytosol	62.53	63.44
Solyc05g005250.2.1	Tomato	cytosol	61.81	60.8
KRH45653	Soybean	cytosol	61.58	60.14
PGSC0003DMT400035152	Potato	cytosol	60.38	59.39
GSMUA_Achr6P09090_001	Banana	cytosol	60.86	54.84
CDY53055	Canola	cytosol	62.53	45.02
CDY47225	Canola	cytosol	62.29	44.92
Bra027158.1-P	Field mustard	cytosol	61.81	44.5
HORVU5Hr1G033110.2	Barley	cytosol	31.98	30.04
KXG19566	Sorghum	cytosol	44.39	28.05
Zm00001d044985_P006	Maize	cytosol, extracellular	43.44	27.74
VIT_17s0000g08520.t01	Wine grape	cytosol	60.86	27.69
TraesCS7D01G167900.1	Wheat	cytosol	42.48	27.22
TraesCS7B01G071900.3	Wheat	cytosol	42.24	27.06
TraesCS7A01G167300.1	Wheat	cytosol	42.0	26.91
Os06t0207000-01	Rice	cytosol	42.24	26.58
VIT_03s0038g04010.t01	Wine grape	cytosol	11.22	12.81

Protein Annotations

KEGG:00770+2.7.1.33	Gene3D:1.10.8.780	EntrezGene:100258468	wikigene:100258468	Gene3D:3.30.420.40	Gene3D:3.30.420.510
MapMan:7.4.2	ProteinID:CBI28545	ProteinID:CBI28545.3	UniProt:D7TDH2	EMBL:FN595761	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004594	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015937	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	EntrezGene:LOC100258468	wikigene:LOC100258468	PFAM:PF03630	PANTHER:PTHR12280
PANTHER:PTHR12280:SF34	SUPFAM:SSF53067	TIGR:TC60114	TIGRFAMs:TIGR00555	InterPro:Type_II_PanK	UniParc:UPI0001982A19
ArrayExpress:VIT_01s0127g00490	EnsemblPlantsGene:VIT_01s0127g00490	EnsemblPlants:VIT_01s0127g00490.t01	unigene:Vvi.2145	RefSeq:XP_002267027	RefSeq:XP_002267027.2
RefSeq:XP_010651426.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:+:7860920..7871103

Molecular Weight (calculated)

46182.8 Da

IEP (calculated)

6.057

GRAVY (calculated)

-0.210

Length

419 amino acids

Sequence
(BLAST)

001: MEARCSGIER NSEDGGSKAL APDEISHLAL DIGGTLIKLV YFSRNDSWSV DDKGAKSPKG DSPLRVSCSN LDYPILYGRI HFAKFETIKV NECLEFIRSK
101: KLLHGGCWHH EAPVSDKNVI KATGGGAYKF ADLFKENLGL NLDKEDEMDC LVSGANFLLK AVHHEAFTYM DGQKEFVQID HNDLYPYLLV NIGSGVSMLK
201: VDGDGKFERV SGTNVGGGTF WGLGRLLTKC KSFDELLELS HQGNNRVIDM LVGDIYGGMD YSKFGLASTT IASSFGKAIS ENKELEDYRP EDVARSLLRM
301: ISNNIGQISY LNALRFGLKR IFFGGFFIRG HAYTMDTISV AVNFWSKGEA KAMFLRHEGF LGALGAFMSY EKNNYDGLMV HQLVEQVSTS ASYSGDKIHS
401: SLAGDLNDSE SIGCSVYTT

Best Arabidopsis Sequence Match ( AT4G32180.2 )
(BLAST)

001: MAGQEDEYDP ILDNKREAEA KSQVSVAADK NMAPSTSGTP IHRSGSRPQL DLSKAEIQGN LEERDPTILL PNQSDDISHL ALDIGGSLIK LLYFSRHEDY
101: SNDDDKRKRT IKERLGITNG NLRSYPVLGG RLHFVKFETH KINECLDFIH SKQLHRRDPY PWSSKTLPLG TGVIKVTGGG AFKFADLFKE RLGVSIEKED
201: EMHCLVSGAN FLLKAIRHEA FTHMEGEKEF VQIDPNDLYP YLLVNVGSGV SIIKVDGEGK FERVSGTNVG GGTYWGLGRL LTKCKSFDEL LELSQKGDNS
301: AIDMLVGDIY GGMDYSKIGL SASTIASSFG KAISENKELD DYRPEDISLS LLRMISYNIG QISYLNALRF GLKRIFFGGF FIRGHAYTMD TISFAVHFWS
401: KGEMQAMFLR HEGFLGALGA FMSYEKHGLD DLMSHQLVER FPMGAPYTGG NIHGPPLGDL DEKISWMEKF VRRGTEITAP VPMTPSKTTG LGGFEVPSSR
501: GSALRSDASA LNVGVLHLVP TLEVFPLLAD PKTYEPNTID LSDQGEREYW LKVLSEHLPD LVDTAVASEG GTEDAKRRGD AFARAFSAHL ARLMEEPAAY
601: GKLGLANLLE LREECLREFQ FVDAYRSIKQ RENEASLAVL PDLLEELDSM SEEARLLTLI EGVLAANIFD WGSRACVDLY HKGTIIEIYR MSRNKMQRPW
701: RVDDFDAFKE RMLGSGGKQP HRHKRALLFV DNSGADVILG MLPLAREFLR RGTEVVLVAN SLPALNDVTA MELPDIVAGA AKV

Arabidopsis Description

PANK2PANK2 [Source:UniProtKB/TrEMBL;Acc:A0A178V4D0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.