Factsheet for VIT_03s0038g04010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
nucleus 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38729	Soybean	cytosol, nucleus	91.55	91.55
AT4G35360.1	Thale cress	cytosol	85.56	85.56
PGSC0003DMT400038080	Potato	cytosol	84.74	85.44
Bra011609.1-P	Field mustard	cytosol	85.29	85.29
CDX75497	Canola	cytosol	85.29	85.29
CDX69133	Canola	cytosol	84.47	84.47
GSMUA_Achr9P12370_001	Banana	cytosol	84.47	84.24
AT2G17340.1	Thale cress	cytosol	83.92	83.92
EER88334	Sorghum	cytosol, plastid	79.56	80.0
Os06t0325500-01	Rice	extracellular, plasma membrane	79.56	80.0
TraesCS7D01G228000.1	Wheat	golgi, unclear	79.29	79.73
AT2G17320.1	Thale cress	cytosol	78.2	79.5
TraesCS7A01G226400.1	Wheat	cytosol, plastid	79.02	79.45
TraesCS7B01G193200.1	Wheat	cytosol, plastid	78.75	79.18
CDY07861	Canola	cytosol	78.2	79.06
CDX87995	Canola	cytosol	77.38	78.67
Bra009651.1-P	Field mustard	cytosol	77.38	78.67
Zm00001d045911_P002	Maize	cytosol, plastid	79.56	71.05
Solyc01g112270.1.1	Tomato	cytosol	23.71	57.24
HORVU3Hr1G078460.1	Barley	mitochondrion	13.35	34.75
VIT_17s0000g08520.t01	Wine grape	cytosol	29.97	11.94
VIT_01s0127g00490.t01	Wine grape	cytosol	12.81	11.22

Protein Annotations

KEGG:00770+2.7.1.33	Gene3D:1.20.1700.10	EntrezGene:100265775	wikigene:100265775	Gene3D:3.40.50.10880	MapMan:35.1
InterPro:AF1104-like_sf	InterPro:At2g17340_3_helix_bundle	ProteinID:CBI37726	ProteinID:CBI37726.3	UniProt:D7U4Q7	InterPro:DUF89
EMBL:FN596508	InterPro:IPR035073	EntrezGene:LOC100265775	wikigene:LOC100265775	PFAM:PF01937	PIRSF:PIRSF030210
PANTHER:PTHR12280	PANTHER:PTHR12280:SF31	SUPFAM:SSF111321	TIGR:TC53772	InterPro:UCP030210	UniParc:UPI00015C8CDA
ArrayExpress:VIT_03s0038g04010	EnsemblPlantsGene:VIT_03s0038g04010	EnsemblPlants:VIT_03s0038g04010.t01	unigene:Vvi.12013	RefSeq:XP_002283109	RefSeq:XP_002283109.1

Description

No Description!

Coordinates

chr3:-:2913178..2918354

Molecular Weight (calculated)

41040.3 Da

IEP (calculated)

4.661

GRAVY (calculated)

-0.080

Length

367 amino acids

Sequence
(BLAST)

001: MESSSELVAF PLLLTPIESN YRACTIPYRF PSDNPRKATP TELSWIDLFL NSIPSFRKRA ESDGTVADAN VKAEKFAQRY SEILEDLKKD PESHGGPPDC
101: VLLCRLREQV LRELGFRDIF KKVKDEENAK AISLFENVVH LNDAIEDESK RLENLVRGIF AGNIFDLGSA QLAEVFSKDG MSFLASCQNL VPRPWVIDDL
201: DSFKLKWSRK SWKKVIIFVD NSGADIILGI LPFARELLRC GSQVVLAAND LPSINDVTYP ELIEIIAKLK DENGQLVGVD TSNLLIANSG NDLPVIDLTR
301: ISQELAYLAS DADLVILEGM GRGIETNLYA QFKCDSLKIG MVKHLEVAQF LGGRLYDCVF KYNEVLS

Best Arabidopsis Sequence Match ( AT4G35360.1 )
(BLAST)

001: MESDSEMVAL PLLPTPIESN YRACTIPYRF PSDNPRKATP TEISWIDLFS NSIPSFKERA ESDTTVPDAP VRAEKFAKRY AEILEDLKKD PESHGGPPDC
101: ILLCRIRELI LRELGFRDIF KKVKDEENAK AISLFPEVVR LSDAINDEGK RIENLVRGIF AGNIFDLGSA QLAEVFSKDG MSFLASCQNL VSRPWVIDDL
201: DNFQARWLKK PWKKAVIFVD NSGADIILGI LPFAREMLRL GMQVVLAANE LPSINDVTYI ELAEILSKLN DENGQLMGVD TSNLLIANSG NDLPVIDLAR
301: VSQEVAYLSS DADLVILEGM GRGIETNLYA QFKCDSLKIG MVKHPEVAQF LGGRLYDCVI KYNEVQI

Arabidopsis Description

At4g35360/F23E12_80 [Source:UniProtKB/TrEMBL;Acc:Q8W4Q1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.