CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
nucleus 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011609.1-P	Field mustard	cytosol	100.0	100.0
CDX69133	Canola	cytosol	98.64	98.64
AT4G35360.1	Thale cress	cytosol	95.91	95.91
KRH38729	Soybean	cytosol, nucleus	86.65	86.65
VIT_03s0038g04010.t01	Wine grape	cytosol	85.29	85.29
Solyc10g074590.1.1	Tomato	cytosol	82.29	82.29
CDY07861	Canola	cytosol	81.2	82.09
CDX87995	Canola	cytosol	80.65	81.99
GSMUA_Achr9P12370_001	Banana	cytosol	80.38	80.16
Os06t0325500-01	Rice	extracellular, plasma membrane	77.93	78.36
EER88334	Sorghum	cytosol, plastid	77.93	78.36
TraesCS7D01G228000.1	Wheat	golgi, unclear	77.66	78.08
TraesCS7A01G226400.1	Wheat	cytosol, plastid	77.38	77.81
TraesCS7B01G193200.1	Wheat	cytosol, plastid	77.11	77.53
KRH34342	Soybean	cytosol	40.05	74.24
KRG92458	Soybean	plastid	73.57	74.18
PGSC0003DMT400043345	Potato	cytosol	82.83	70.05
Zm00001d045911_P002	Maize	cytosol, plastid	78.2	69.83
KRG92457	Soybean	plastid	74.11	64.15
KRH30808	Soybean	mitochondrion	42.23	46.83
HORVU3Hr1G078460.1	Barley	mitochondrion	13.62	35.46
CDX75226	Canola	cytosol	31.06	12.53
CDX68824	Canola	cytosol	30.79	12.47
CDY61390	Canola	cytosol	30.52	12.46
CDY40427	Canola	cytosol	9.81	12.08
CDY47225	Canola	cytosol	14.99	9.47
CDY53055	Canola	cytosol	14.99	9.45
CDY24491	Canola	cytosol	1.36	7.81

Protein Annotations

EnsemblPlants:CDX75497	EnsemblPlantsGene:GSBRNA2T00121395001	Gene3D:1.20.1700.10	Gene3D:3.40.50.10880	InterPro:AF1104-like_sf	InterPro:At2g17340_3_helix_bundle
InterPro:DUF89	InterPro:IPR035073	InterPro:UCP030210	KEGG:00770+2.7.1.33	PANTHER:PTHR12280	PANTHER:PTHR12280:SF31
PFAM:PF01937	PIRSF:PIRSF030210	ProteinID:CDX75497	ProteinID:CDX75497.1	SEG:seg	SUPFAM:SSF111321
UniParc:UPI0002547129	MapMan:35.1	:	:	:	:

Description

BnaA01g02050D

Coordinates

chrLK031804:-:1387653..1390103

Molecular Weight (calculated)

41073.4 Da

IEP (calculated)

4.529

GRAVY (calculated)

-0.113

Length

367 amino acids

Sequence
(BLAST)

001: MESDSVMVPF PLLPVPIESN YRACTIPYRF PSDNPRKATP TEISWIDLFS NSIPSFKERA ESDTSVPDAP VRAEKFAQRY AEILEDLKKD PESHGGPPDC
101: ILLCRIRELI LRELGFRDIF KKVKDEENAK AITLFPEVVR LSDAIEDEGK RIENLVRGIF AGNIFDLGSA QLAEVFSKDG MSFLASCQNL VPRPWVIDDL
201: DNFQARWLKK PWKKAVIFVD NSGADIILGI LPFAREMLRQ GMQVVLAANE LPSINDVTYT ELAEILSKLK DENGQLMGVD ISNLLIANSG NDLPVIDLAR
301: VSQEVAYLST DADLVILEGM GRGIETNLYA QFKCDSLKIG MVKHPEVAQF LGGRLYDCVI KYNEVQS

Best Arabidopsis Sequence Match ( AT4G35360.1 )
(BLAST)

001: MESDSEMVAL PLLPTPIESN YRACTIPYRF PSDNPRKATP TEISWIDLFS NSIPSFKERA ESDTTVPDAP VRAEKFAKRY AEILEDLKKD PESHGGPPDC
101: ILLCRIRELI LRELGFRDIF KKVKDEENAK AISLFPEVVR LSDAINDEGK RIENLVRGIF AGNIFDLGSA QLAEVFSKDG MSFLASCQNL VSRPWVIDDL
201: DNFQARWLKK PWKKAVIFVD NSGADIILGI LPFAREMLRL GMQVVLAANE LPSINDVTYI ELAEILSKLN DENGQLMGVD TSNLLIANSG NDLPVIDLAR
301: VSQEVAYLSS DADLVILEGM GRGIETNLYA QFKCDSLKIG MVKHPEVAQF LGGRLYDCVI KYNEVQI

Arabidopsis Description

At4g35360/F23E12_80 [Source:UniProtKB/TrEMBL;Acc:Q8W4Q1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.