CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 4
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0038g04010.t01	Wine grape	cytosol	91.55	91.55
Bra011609.1-P	Field mustard	cytosol	86.65	86.65
CDX75497	Canola	cytosol	86.65	86.65
AT4G35360.1	Thale cress	cytosol	86.1	86.1
CDX69133	Canola	cytosol	85.56	85.56
AT2G17340.1	Thale cress	cytosol	84.2	84.2
PGSC0003DMT400038080	Potato	cytosol	82.56	83.24
GSMUA_Achr9P12370_001	Banana	cytosol	82.02	81.79
AT2G17320.1	Thale cress	cytosol	79.56	80.89
EER88334	Sorghum	cytosol, plastid	80.38	80.82
KRH34342	Soybean	cytosol	43.32	80.3
CDY07861	Canola	cytosol	79.02	79.89
TraesCS7D01G228000.1	Wheat	golgi, unclear	79.29	79.73
KRG92458	Soybean	plastid	79.02	79.67
CDX87995	Canola	cytosol	78.2	79.5
Bra009651.1-P	Field mustard	cytosol	78.2	79.5
TraesCS7A01G226400.1	Wheat	cytosol, plastid	79.02	79.45
Os06t0325500-01	Rice	extracellular, plasma membrane	79.02	79.45
TraesCS7B01G193200.1	Wheat	cytosol, plastid	78.75	79.18
Zm00001d045911_P002	Maize	cytosol, plastid	80.38	71.78
KRG92457	Soybean	plastid	80.38	69.58
Solyc01g112270.1.1	Tomato	cytosol	23.16	55.92
KRH30808	Soybean	mitochondrion	45.23	50.15
KRH33424	Soybean	cytosol	9.26	32.08
KRG90159	Soybean	cytosol	10.63	20.74
KRH03287	Soybean	cytosol	30.79	12.53
KRH19967	Soybean	cytosol	31.06	12.39
KRH54393	Soybean	cytosol	30.79	12.39
KRG99350	Soybean	cytosol	13.08	11.62
KRH45653	Soybean	cytosol	12.81	10.96
KRH57072	Soybean	cytosol	8.17	9.26
KRH55310	Soybean	cytosol	12.53	8.93

Protein Annotations

EMBL:ACUP02005868	EnsemblPlants:KRH38729	EnsemblPlantsGene:GLYMA_09G154000	Gene3D:1.20.1700.10	Gene3D:3.40.50.10880	InterPro:AF1104-like_sf
InterPro:At2g17340_3_helix_bundle	InterPro:DUF89	InterPro:IPR035073	InterPro:UCP030210	KEGG:00770+2.7.1.33	MetaCyc:PWY-3961
PANTHER:PTHR12280	PANTHER:PTHR12280:SF31	PFAM:PF01937	PIRSF:PIRSF030210	ProteinID:KRH38729	ProteinID:KRH38729.1
SEG:seg	SUPFAM:SSF111321	UniParc:UPI0001BA89DC	UniProt:I1L3K8	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr9:+:37679654..37686371

Molecular Weight (calculated)

40892.1 Da

IEP (calculated)

4.614

GRAVY (calculated)

-0.107

Length

367 amino acids

Sequence
(BLAST)

001: MESASELVEF PLLLTPIDSN YRACTIPYRF PSDNPRKPTP TEISWIDLFL NSIPSFKKRA ESDTSVPDAA AKAEKFAQRY ADILEDLKKD PESHGGPPDC
101: ILLCRLRELV LRELGFRDIF KKVKDEENAK AISLFENVVH LNDAIEDEGK RLENLVRGIF AGNIFDLGSA QLAEVFSKDG MSFLASCQNL VPRPWVIDDL
201: DTFKLKWSKN PWKKVIIFVD NSGADIILGI MPFARELLRR GSQVVLAAND LPSINDVTCS ELVEIISKLK DEDGQLVGVS TSNLLIANSG NDLPVIDLTR
301: VSQELAYLAS DADLVILEGM GRGIETNLYA QFKCDSLKIG MVKHPEVAQF LGGRLYDCVF KYNEVSS

Best Arabidopsis Sequence Match ( AT4G35360.1 )
(BLAST)

001: MESDSEMVAL PLLPTPIESN YRACTIPYRF PSDNPRKATP TEISWIDLFS NSIPSFKERA ESDTTVPDAP VRAEKFAKRY AEILEDLKKD PESHGGPPDC
101: ILLCRIRELI LRELGFRDIF KKVKDEENAK AISLFPEVVR LSDAINDEGK RIENLVRGIF AGNIFDLGSA QLAEVFSKDG MSFLASCQNL VSRPWVIDDL
201: DNFQARWLKK PWKKAVIFVD NSGADIILGI LPFAREMLRL GMQVVLAANE LPSINDVTYI ELAEILSKLN DENGQLMGVD TSNLLIANSG NDLPVIDLAR
301: VSQEVAYLSS DADLVILEGM GRGIETNLYA QFKCDSLKIG MVKHPEVAQF LGGRLYDCVI KYNEVQI

Arabidopsis Description

At4g35360/F23E12_80 [Source:UniProtKB/TrEMBL;Acc:Q8W4Q1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.