CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99350
KRH45653

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60440.1	KRG99350	AT1G60440.1	21798944
AT1G60440.1	KRH45653	AT1G60440.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45653	Soybean	cytosol	84.5	81.35
AT1G60440.1	Thale cress	cytosol	59.32	63.97
CDY40427	Canola	cytosol	46.0	63.76
VIT_01s0127g00490.t01	Wine grape	cytosol	63.44	62.53
Solyc05g005250.2.1	Tomato	cytosol	58.84	57.04
PGSC0003DMT400035152	Potato	cytosol	58.84	57.04
KRH57072	Soybean	cytosol	43.83	55.86
GSMUA_Achr6P09090_001	Banana	cytosol	55.69	49.46
Bra027158.1-P	Field mustard	cytosol	58.35	41.41
CDY53055	Canola	cytosol	58.35	41.41
CDY47225	Canola	cytosol	57.87	41.14
HORVU5Hr1G033110.2	Barley	cytosol	30.27	28.03
KRH54393	Soybean	cytosol	60.53	27.41
KRH19967	Soybean	cytosol	60.29	27.07
KRH03287	Soybean	cytosol	58.84	26.94
Zm00001d044985_P006	Maize	cytosol, extracellular	41.89	26.37
TraesCS7D01G167900.1	Wheat	cytosol	41.65	26.3
KXG19566	Sorghum	cytosol	42.13	26.24
TraesCS7B01G071900.3	Wheat	cytosol	41.4	26.15
TraesCS7A01G167300.1	Wheat	cytosol	41.16	25.99
Os06t0207000-01	Rice	cytosol	41.4	25.68
KRH33424	Soybean	cytosol	3.39	13.21
KRH38729	Soybean	cytosol, nucleus	11.62	13.08
KRG92458	Soybean	plastid	10.65	12.09
KRH30808	Soybean	mitochondrion	8.72	10.88
KRG92457	Soybean	plastid	10.17	9.91
KRG90159	Soybean	cytosol	3.39	7.45
KRH34342	Soybean	cytosol	3.39	7.07
KRH55310	Soybean	cytosol	7.02	5.63

Protein Annotations

KEGG:00770+2.7.1.33	Gene3D:1.10.8.780	EntrezGene:100782208	Gene3D:3.30.420.40	Gene3D:3.30.420.510	MapMan:7.4.2
EMBL:ACUP02011039	EnsemblPlantsGene:GLYMA_18G139100	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004594
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015937	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	UniProt:I1N1H5
EnsemblPlants:KRG99350	ProteinID:KRG99350	ProteinID:KRG99350.1	PFAM:PF03630	PANTHER:PTHR12280	PANTHER:PTHR12280:SF44
MetaCyc:PWY-3961	SUPFAM:SSF53067	TIGRFAMs:TIGR00555	InterPro:Type_II_PanK	UniParc:UPI000233E9B1	SEG:seg

Description

hypothetical protein

Coordinates

chr18:-:20820169..20828364

Molecular Weight (calculated)

45695.5 Da

IEP (calculated)

6.145

GRAVY (calculated)

-0.261

Length

413 amino acids

Sequence
(BLAST)

001: MDLREGQTQP ILDPNQPSHV YHLALDIGGS LAKLVYFTKD DDHLVDGEEG ISHRKAFEKS NGSKQYPVLN GRLNFKKFET SKINDCIEFI KSMKLHIGGS
101: QPQENPGSQS IAIKATGGGA YKYADLFKER LGIIFDKEDE MDCLVAGANF LLEVVHQEAF TYMGDQKQFV QIDQNDLYPY LLVNIGSGVG MIKVEGEGKF
201: ERVSGTSIGG GTFWGLGKLL TECKSFDELL DLSYRGNNRA VDMLVGDIYG GMDYSKIGLS STAIASSFGK AISDNKERED YKPEDIARSL LRMISNNIGQ
301: ISYLNALRFG MKRIFFGGFF IRRHPFTMDT LSVAVNFWSK GEAKAMFLRH EGFLGGVGAF MSSDKHGLKE LLAHQVVQRS LSKLSFAVDK ILHGSPDGDF
401: NGDESIECSV YAA

Best Arabidopsis Sequence Match ( AT1G60440.1 )
(BLAST)

001: MDPTQISHLA LDIGGTLIKL VYFSANGDYS EESRNGCSVV KGRLCFAKFE TRKIDDCLEF IRFNILHHSG VQQPNGEGHD KLYVKATGGG AFKFADLFKE
101: KLGILFDKED EMCSLVGGVN FLLKTVPREA FTYLDGQKKF VEIDHNDLYP YLLVNIGSGV SMIKVDGDGK YERISGTSLG GGTFLGLGKL LTKCKSFDEL
201: LELSHHGNNR VIDMLVGDIY GGTDYSKIGL SSTAIASSFG KAISDGKELE DYQPEDVARS LLRMISNNIG QIAYLNALRF GLKRIFFGGF FIRGLEYTMD
301: TISVAVHFWS RGEAKAMFLR HEGFLGALGA FTSYNDQSHN DLKPHHHTVQ RAILNCSGHN FRHIPVTSNL NESETIECSI NLV

Arabidopsis Description

PANK1Pantothenate kinase 1 [Source:UniProtKB/Swiss-Prot;Acc:O80765]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.