CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
plastid 4
nucleus 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34342	Soybean	cytosol	45.88	84.34
KRH38729	Soybean	cytosol, nucleus	79.67	79.02
KRG92457	Soybean	plastid	87.64	75.24
Bra011609.1-P	Field mustard	cytosol	74.18	73.57
CDX75497	Canola	cytosol	74.18	73.57
AT2G17340.1	Thale cress	cytosol	73.9	73.3
CDX69133	Canola	cytosol	73.35	72.75
AT4G35360.1	Thale cress	cytosol	72.8	72.21
AT2G17320.1	Thale cress	cytosol	69.78	70.36
GSMUA_Achr9P12370_001	Banana	cytosol	70.6	69.84
CDX87995	Canola	cytosol	69.23	69.81
Bra009651.1-P	Field mustard	cytosol	69.23	69.81
CDY07861	Canola	cytosol	69.23	69.42
EER88334	Sorghum	cytosol, plastid	68.41	68.22
Os06t0325500-01	Rice	extracellular, plasma membrane	68.41	68.22
TraesCS7D01G228000.1	Wheat	golgi, unclear	67.31	67.12
TraesCS7B01G193200.1	Wheat	cytosol, plastid	67.03	66.85
TraesCS7A01G226400.1	Wheat	cytosol, plastid	67.03	66.85
Zm00001d045911_P002	Maize	cytosol, plastid	68.41	60.58
KRH30808	Soybean	mitochondrion	49.18	54.08
KRH33424	Soybean	cytosol	8.24	28.3
KRG90159	Soybean	cytosol	9.34	18.09
KRH03287	Soybean	cytosol	30.77	12.42
KRH54393	Soybean	cytosol	30.77	12.28
KRH19967	Soybean	cytosol	30.77	12.17
KRG99350	Soybean	cytosol	12.09	10.65
KRH45653	Soybean	cytosol	11.54	9.79
KRH55310	Soybean	cytosol	13.19	9.32
KRH57072	Soybean	cytosol	7.69	8.64

Protein Annotations

KEGG:00770+2.7.1.33	Gene3D:1.20.1700.10	EntrezGene:100815745	Gene3D:3.40.50.10880	MapMan:35.1	EMBL:ACUP02012759
InterPro:AF1104-like_sf	InterPro:At2g17340_3_helix_bundle	InterPro:DUF89	EnsemblPlantsGene:GLYMA_20G212500	InterPro:IPR035073	UniProt:K7N4U9
EnsemblPlants:KRG92458	ProteinID:KRG92458	ProteinID:KRG92458.1	PFAM:PF01937	PIRSF:PIRSF030210	PANTHER:PTHR12280
PANTHER:PTHR12280:SF31	MetaCyc:PWY-3961	SUPFAM:SSF111321	InterPro:UCP030210	UniParc:UPI000233DC4B	SEG:seg

Description

hypothetical protein

Coordinates

chr20:+:44890695..44895547

Molecular Weight (calculated)

40678.1 Da

IEP (calculated)

4.577

GRAVY (calculated)

-0.017

Length

364 amino acids

Sequence
(BLAST)

001: MGSISQPQLV PFPLLMNGNY TASTIPWRLP SDDPSIPTPI ELSWLNLFLN TIPTFKKHAE SDTSVPDAVN KAEEFAQRFA RIIEDFKKDP ASQGVPLDVL
101: LPCRLREQVL KELGFRDIFK KIKDVENANA ISLFENVVRL NDAIEDEGKR LENLVRGIFA GNIFDLGASQ LAEVFSRDGM SFSVTCQNLV PRPWVIDDLE
201: TFKMKWSKKS WKKVIIFVDN SGADIILGIL PFARELLRHG SQVILAANDL PSLNDVTYAE LLEIISKLKD EEGCLMGVST SNLIIANSGN DLPVIDLTRV
301: SQELAYLAND ADLVILEGMG RGIETNLYAQ FKCDSLKIAM VKHPEVAEFL GSRLYDCVIK YDEL

Best Arabidopsis Sequence Match ( AT2G17340.1 )
(BLAST)

001: MESDSEMVPF PQLPMPIENN YRACTIPYRF PSDDPKKATP NEISWINVFA NSIPSFKKRA ESDITVPDAP ARAEKFAERY AGILEDLKKD PESHGGPPDG
101: ILLCRLREQV LRELGFRDIF KKVKDEENAK AISLFPQVVS LSDAIEDDGK RLENLVRGIF AGNIFDLGSA QLAEVFSRDG MSFLASCQNL VPRPWVIDDL
201: ENFQAKWINK SWKKAVIFVD NSGADIILGI LPFARELLRR GAQVVLAANE LPSINDITCT ELTEILSQLK DENGQLLGVD TSKLLIANSG NDLPVIDLSR
301: VSQELAYLSS DADLVIVEGM GRGIETNLYA QFKCDSLKIG MVKHLEVAEF LGGRLYDCVF KFNEVQS

Arabidopsis Description

Uncharacterized protein At2g17340 [Source:UniProtKB/Swiss-Prot;Acc:Q949P3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.