CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 3
plastid 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0325500-01	Rice	extracellular, plasma membrane	94.52	94.52
TraesCS7D01G228000.1	Wheat	golgi, unclear	93.15	93.15
TraesCS7A01G226400.1	Wheat	cytosol, plastid	92.88	92.88
TraesCS7B01G193200.1	Wheat	cytosol, plastid	92.6	92.6
Zm00001d045911_P002	Maize	cytosol, plastid	98.36	87.35
GSMUA_Achr9P12370_001	Banana	cytosol	87.4	86.68
KRH38729	Soybean	cytosol, nucleus	80.82	80.38
VIT_03s0038g04010.t01	Wine grape	cytosol	80.0	79.56
Bra011609.1-P	Field mustard	cytosol	78.36	77.93
CDX69133	Canola	cytosol	78.36	77.93
CDX75497	Canola	cytosol	78.36	77.93
Solyc10g074590.1.1	Tomato	cytosol	78.08	77.66
AT4G35360.1	Thale cress	cytosol	77.81	77.38
AT2G17340.1	Thale cress	cytosol	77.53	77.11
PGSC0003DMT400038080	Potato	cytosol	75.62	75.82
AT2G17320.1	Thale cress	cytosol	72.88	73.68
CDX87995	Canola	cytosol	71.51	72.3
Bra009651.1-P	Field mustard	cytosol	71.51	72.3
CDY07861	Canola	cytosol	71.78	72.18
KRG92458	Soybean	plastid	68.22	68.41
KRH34342	Soybean	cytosol	36.16	66.67
PGSC0003DMT400043345	Potato	cytosol	79.18	66.59
KRG92457	Soybean	plastid	69.04	59.43
Solyc01g112270.1.1	Tomato	cytosol	21.37	51.32
KRH30808	Soybean	mitochondrion	38.9	42.9
HORVU3Hr1G078460.1	Barley	mitochondrion	13.97	36.17
EER97090	Sorghum	cytosol	31.51	12.75
KXG19566	Sorghum	cytosol	12.6	6.94

Protein Annotations

KEGG:00770+2.7.1.33	Gene3D:1.20.1700.10	Gene3D:3.40.50.10880	MapMan:35.1	EntrezGene:8072874	InterPro:AF1104-like_sf
InterPro:At2g17340_3_helix_bundle	UniProt:C5Z1R2	InterPro:DUF89	EnsemblPlants:EER88334	ProteinID:EER88334	ProteinID:EER88334.1
InterPro:IPR035073	PFAM:PF01937	PIRSF:PIRSF030210	PANTHER:PTHR12280	PANTHER:PTHR12280:SF31	MetaCyc:PWY-3961
EnsemblPlantsGene:SORBI_3010G133400	SUPFAM:SSF111321	unigene:Sbi.3793	InterPro:UCP030210	UniParc:UPI0001A88FAB	RefSeq:XP_002436967.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:19418331..19424772

Molecular Weight (calculated)

40462.6 Da

IEP (calculated)

4.661

GRAVY (calculated)

-0.152

Length

365 amino acids

Sequence
(BLAST)

001: MESSSPSVPF PLLQAPVEST YRACTIPYRF PSDNPRKATP VEIQWIDLFL NSVPSFKQRA ENDPTVPDAP AKAEKFAQRY TTMLEELKKN PESHGGPPDC
101: ILLCRLRELV LRELGFRDIF KKVKDEENAK AMSLFEGVVK RNDEIEDDGK RVENLIRGIL AGNIFDLGSA QLAEVFAKDG MSFLASCQNL VSRPWVIDDL
201: DAFKSKWTKK SWEKAVIFVD NSGADIILGI LPFARELLRR GTKVILAAND MPSINDVTYP ELVEIINELK DADGKLSGVD ASGLLVANSG NDLPVIDLSS
301: VSPELAFMAN DADLVVLEGM GRAIETNLYA QMKCDSIKIG MVKHPEVAQF LGGRLYDCVF KFNEA

Best Arabidopsis Sequence Match ( AT4G35360.1 )
(BLAST)

001: MESDSEMVAL PLLPTPIESN YRACTIPYRF PSDNPRKATP TEISWIDLFS NSIPSFKERA ESDTTVPDAP VRAEKFAKRY AEILEDLKKD PESHGGPPDC
101: ILLCRIRELI LRELGFRDIF KKVKDEENAK AISLFPEVVR LSDAINDEGK RIENLVRGIF AGNIFDLGSA QLAEVFSKDG MSFLASCQNL VSRPWVIDDL
201: DNFQARWLKK PWKKAVIFVD NSGADIILGI LPFAREMLRL GMQVVLAANE LPSINDVTYI ELAEILSKLN DENGQLMGVD TSNLLIANSG NDLPVIDLAR
301: VSQEVAYLSS DADLVILEGM GRGIETNLYA QFKCDSLKIG MVKHPEVAQF LGGRLYDCVI KYNEVQI

Arabidopsis Description

At4g35360/F23E12_80 [Source:UniProtKB/TrEMBL;Acc:Q8W4Q1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.