CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92458	Soybean	plastid	75.24	87.64
KRH34342	Soybean	cytosol	38.68	82.83
KRH38729	Soybean	cytosol, nucleus	69.58	80.38
AT2G17340.1	Thale cress	cytosol	64.15	74.11
CDX75497	Canola	cytosol	64.15	74.11
Bra011609.1-P	Field mustard	cytosol	64.15	74.11
CDX69133	Canola	cytosol	63.44	73.3
AT4G35360.1	Thale cress	cytosol	62.97	72.75
AT2G17320.1	Thale cress	cytosol	61.08	71.75
CDX87995	Canola	cytosol	60.38	70.91
Bra009651.1-P	Field mustard	cytosol	60.38	70.91
CDY07861	Canola	cytosol	60.14	70.25
GSMUA_Achr9P12370_001	Banana	cytosol	60.61	69.84
EER88334	Sorghum	cytosol, plastid	59.43	69.04
Os06t0325500-01	Rice	extracellular, plasma membrane	59.43	69.04
TraesCS7D01G228000.1	Wheat	golgi, unclear	58.02	67.4
TraesCS7B01G193200.1	Wheat	cytosol, plastid	57.78	67.12
TraesCS7A01G226400.1	Wheat	cytosol, plastid	57.78	67.12
Zm00001d045911_P002	Maize	cytosol, plastid	59.43	61.31
KRH30808	Soybean	mitochondrion	45.99	58.91
KRH33424	Soybean	cytosol	6.84	27.36
KRG90159	Soybean	cytosol	7.78	17.55
KRH03287	Soybean	cytosol	25.47	11.97
KRH19967	Soybean	cytosol	25.71	11.85
KRH54393	Soybean	cytosol	25.47	11.84
KRG99350	Soybean	cytosol	9.91	10.17
KRH45653	Soybean	cytosol	9.91	9.79
KRH55310	Soybean	cytosol	11.08	9.13
KRH57072	Soybean	cytosol	5.9	7.72

Protein Annotations

EMBL:ACUP02012759	EnsemblPlants:KRG92457	EnsemblPlantsGene:GLYMA_20G212400	EntrezGene:100789699	Gene3D:1.20.1700.10	Gene3D:3.40.50.10880
InterPro:AF1104-like_sf	InterPro:At2g17340_3_helix_bundle	InterPro:DUF89	InterPro:IPR035073	KEGG:00770+2.7.1.33	MetaCyc:PWY-3961
PANTHER:PTHR12280	PANTHER:PTHR12280:SF31	PFAM:PF01937	ProteinID:KRG92457	ProteinID:KRG92457.1	SUPFAM:SSF111321
UniParc:UPI00029614B4	UniProt:K7N4U8	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:44882114..44887544

Molecular Weight (calculated)

47339.8 Da

IEP (calculated)

5.184

GRAVY (calculated)

-0.082

Length

424 amino acids

Sequence
(BLAST)

001: MLRSLTTSMG IVSVAPTQTV VYLVPRYPPS ISTYLYASSL TKAKTIHQPT QSYVHSKSVE TAIESTSQLV PFPLLTNGNY TACTIPWRFP SDDPSIPTPT
101: ELSWINLLLN TIPTFKKHAE NDTSVPDAAN KAENFAQRYA RILEDFKKDP ASQGRPLDIL ILCRLREQVL REQGFRDIFK KIKDVENANA ISLFQNVVHL
201: NDAIEDEGKR LENLVRGIFA GNIFDLGATQ LAEVFSRDGV SFSTTCQNLV PRPWIIDDLE TFRIAWSKKS WKKVIIFVDN SGADVILGIL PFARELLRRG
301: SQVILAANDL PSINDVTYSD LIEIIPKLKD EEGRLTGVST SNLLIANSGN DLPVIDLTRV SQELAYLAND VDLVILEGMG RGIETNLYAQ FKCDSLKIGM
401: VKHPEVAEFL GSRLYDCVIK YDEV

Best Arabidopsis Sequence Match ( AT2G17340.1 )
(BLAST)

001: MESDSEMVPF PQLPMPIENN YRACTIPYRF PSDDPKKATP NEISWINVFA NSIPSFKKRA ESDITVPDAP ARAEKFAERY AGILEDLKKD PESHGGPPDG
101: ILLCRLREQV LRELGFRDIF KKVKDEENAK AISLFPQVVS LSDAIEDDGK RLENLVRGIF AGNIFDLGSA QLAEVFSRDG MSFLASCQNL VPRPWVIDDL
201: ENFQAKWINK SWKKAVIFVD NSGADIILGI LPFARELLRR GAQVVLAANE LPSINDITCT ELTEILSQLK DENGQLLGVD TSKLLIANSG NDLPVIDLSR
301: VSQELAYLSS DADLVIVEGM GRGIETNLYA QFKCDSLKIG MVKHLEVAEF LGGRLYDCVF KFNEVQS

Arabidopsis Description

Uncharacterized protein At2g17340 [Source:UniProtKB/Swiss-Prot;Acc:Q949P3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.