Factsheet for TraesCS7D01G228000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, unclear
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

golgi: 23128297
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G226400.1	Wheat	cytosol, plastid	99.73	99.73
TraesCS7B01G193200.1	Wheat	cytosol, plastid	99.45	99.45
EER88334	Sorghum	cytosol, plastid	93.15	93.15
Os06t0325500-01	Rice	extracellular, plasma membrane	92.88	92.88
GSMUA_Achr9P12370_001	Banana	cytosol	85.48	84.78
Zm00001d045911_P002	Maize	cytosol, plastid	92.6	82.24
VIT_03s0038g04010.t01	Wine grape	cytosol	79.73	79.29
KRH38729	Soybean	cytosol, nucleus	79.73	79.29
CDX69133	Canola	cytosol	78.36	77.93
Bra011609.1-P	Field mustard	cytosol	78.08	77.66
CDX75497	Canola	cytosol	78.08	77.66
AT4G35360.1	Thale cress	cytosol	77.81	77.38
Solyc10g074590.1.1	Tomato	cytosol	77.26	76.84
AT2G17340.1	Thale cress	cytosol	76.99	76.57
PGSC0003DMT400038080	Potato	cytosol	75.07	75.27
AT2G17320.1	Thale cress	cytosol	72.05	72.85
CDY07861	Canola	cytosol	70.96	71.35
CDX87995	Canola	cytosol	70.41	71.19
Bra009651.1-P	Field mustard	cytosol	70.41	71.19
KRG92458	Soybean	plastid	67.12	67.31
PGSC0003DMT400043345	Potato	cytosol	78.36	65.9
KRH34342	Soybean	cytosol	35.62	65.66
KRG92457	Soybean	plastid	67.4	58.02
Solyc01g112270.1.1	Tomato	cytosol	21.37	51.32
KRH30808	Soybean	mitochondrion	37.53	41.39
HORVU3Hr1G078460.1	Barley	mitochondrion	13.97	36.17
TraesCS5D01G327300.3	Wheat	cytosol	30.14	12.28
TraesCS7D01G167900.1	Wheat	cytosol	12.88	7.19

Protein Annotations

EnsemblPlants:TraesCS7D01G228000.1	EnsemblPlantsGene:TraesCS7D01G228000	Gene3D:1.20.1700.10	Gene3D:3.40.50.10880	InterPro:AF1104-like_sf	InterPro:At2g17340_3_helix_bundle
InterPro:DUF89	InterPro:IPR035073	InterPro:UCP030210	KEGG:00770+2.7.1.33	PANTHER:PTHR12280	PANTHER:PTHR12280:SF31
PFAM:PF01937	PIRSF:PIRSF030210	SEG:seg	SUPFAM:SSF111321	MapMan:35.1	:

Description

No Description!

Coordinates

chr7D:+:188298834..188304070

Molecular Weight (calculated)

40628.9 Da

IEP (calculated)

4.672

GRAVY (calculated)

-0.160

Length

365 amino acids

Sequence
(BLAST)

001: MESSSPSVPF PLLQAPVEST YRACTIPYRF PSDNPRKATP VEIQWIDLFL KSVPSFRQRA ENDPTVPDAP AKAEKFAQRY TDMLEELKKN PESHGGPPDC
101: ILLCRLRELI LRELGFHDIF KKVKDEENAK AMSLFEGVVQ RNDEIEDGEK RAENLIRGIL AGNIFDLGSA QLAEVFAKDG MSFLASCQNL LSRPWVIDDL
201: DAFKSKWTKK SWEKAVIFVD NSGADIILGI LPFARELLRR GTKVILAAND MPSINDITYL ELVEIVNKLK DENGKLAGVD VSDLIVANSG NDLPVIDLSS
301: VAPELAYMAS DADLVILEGM GRGIETNLYA QMKCDSIKIG MVKHPEVAQF LGGRLYDCVF KFNEA

Best Arabidopsis Sequence Match ( AT4G35360.1 )
(BLAST)

001: MESDSEMVAL PLLPTPIESN YRACTIPYRF PSDNPRKATP TEISWIDLFS NSIPSFKERA ESDTTVPDAP VRAEKFAKRY AEILEDLKKD PESHGGPPDC
101: ILLCRIRELI LRELGFRDIF KKVKDEENAK AISLFPEVVR LSDAINDEGK RIENLVRGIF AGNIFDLGSA QLAEVFSKDG MSFLASCQNL VSRPWVIDDL
201: DNFQARWLKK PWKKAVIFVD NSGADIILGI LPFAREMLRL GMQVVLAANE LPSINDVTYI ELAEILSKLN DENGQLMGVD TSNLLIANSG NDLPVIDLAR
301: VSQEVAYLSS DADLVILEGM GRGIETNLYA QFKCDSLKIG MVKHPEVAQF LGGRLYDCVI KYNEVQI

Arabidopsis Description

At4g35360/F23E12_80 [Source:UniProtKB/TrEMBL;Acc:Q8W4Q1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.