CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY40427
CDY47225
CDY53055

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60440.1	CDY40427	AT1G60440.1	21798944
AT1G60440.1	CDY47225	AT1G60440.1	21798944
AT1G60440.1	CDY53055	AT1G60440.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53055	Canola	cytosol	95.7	95.53
CDY40427	Canola	cytosol	43.72	85.23
AT1G60440.1	Thale cress	cytosol	53.01	80.42
VIT_01s0127g00490.t01	Wine grape	cytosol	44.92	62.29
Solyc05g005250.2.1	Tomato	cytosol	43.89	59.86
PGSC0003DMT400035152	Potato	cytosol	43.37	59.15
KRG99350	Soybean	cytosol	41.14	57.87
KRH45653	Soybean	cytosol	39.59	53.61
CDY24491	Canola	cytosol	5.68	51.56
GSMUA_Achr6P09090_001	Banana	cytosol	39.41	49.25
TraesCS7D01G167900.1	Wheat	cytosol	33.39	29.66
TraesCS7B01G071900.3	Wheat	cytosol	33.39	29.66
TraesCS7A01G167300.1	Wheat	cytosol	33.39	29.66
HORVU5Hr1G033110.2	Barley	cytosol	22.55	29.37
Zm00001d044985_P006	Maize	cytosol, extracellular	33.05	29.27
KXG19566	Sorghum	cytosol	33.39	29.26
CDX68824	Canola	cytosol	45.44	29.14
CDX75226	Canola	cytosol	45.44	29.01
CDY61390	Canola	cytosol	44.41	28.7
Os06t0207000-01	Rice	cytosol	32.7	28.53
CDX75497	Canola	cytosol	9.47	14.99
CDX69133	Canola	cytosol	9.29	14.71
CDX87995	Canola	cytosol	9.12	14.68
CDY07861	Canola	cytosol	9.12	14.6

Protein Annotations

KEGG:00770+2.7.1.33	Gene3D:1.10.1760.10	Gene3D:1.10.8.780	MapMan:20.2.2.1.5	Gene3D:3.30.420.40	Gene3D:3.30.420.510
MapMan:7.4.2	GO:A0A078I8I7	UniProt:A0A078I8I7	InterPro:ARPC3	InterPro:ARPC3_sf	EnsemblPlants:CDY47225
ProteinID:CDY47225	ProteinID:CDY47225.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004594
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856
GO:GO:0005885	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015937	GO:GO:0016043	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0030833
GO:GO:0034314	EnsemblPlantsGene:GSBRNA2T00086941001	InterPro:IPR036753	PFAM:PF03630	PFAM:PF04062	PANTHER:PTHR12280
PANTHER:PTHR12280:SF44	MetaCyc:PWY-3961	SUPFAM:SSF53067	SUPFAM:SSF69060	TIGRFAMs:TIGR00555	InterPro:Type_II_PanK
UniPathway:UPA00241	UniParc:UPI0004EEDA2A	SEG:seg	:	:	:

Description

BnaC09g14740DBnaC09g14740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I8I7]

Coordinates

chrLK032703:+:125514..129756

Molecular Weight (calculated)

64348.1 Da

IEP (calculated)

6.945

GRAVY (calculated)

-0.102

Length

581 amino acids

Sequence
(BLAST)

001: MDPKDSLFST QISHLALDIG GTLIKLVYFS PNGDNCEGGS IVVGNGCSVV QGRLCFAKFE TRKIDDCLDF IRFNILQHSG VQHTNGTARD KLSVKATGGG
101: AFKFADLFKE KLGIVFDKED EMHSLVCGVN FLLKTVPREA FTYLDGQKEF VQIDHNDLYP YLLVNIGSGV SMIKVDGDGK YERISGTSLG GGTFLGLGKL
201: LTNCKSFDEL LELSHQGNNR VIDMLVGDIY GGTDYSKIGL SSTAIASSFG KAISDGKELE DYQPEDVARS LLRMISNNIG QIAYLNALRF GLKRIFFGGF
301: FIRGLEYTMD TISVAVHFWS RGEAKAMFLR HEGFLGALGA FTSYKDQSHS TELKPHHHTV ERAVLKCSDD DSFRHTPVTA NVNDGEAIEF RRLETTVATS
401: PRILHRNQVY HSSFVEEEGI TKACGCPLLP LKSHIKGPAP VSEQDRTDIV DEAITFFRAN VFFTNFPIKS PADKLLIYLT FYINVALKRL EGCRTLAVGT
501: KAIINLGLED IPVPGETGFP FPGLFSLPSS QEEADLFRNY LKQVREETSG RLLSVAYRAN GTPNKWWLAF AKRKFINVVL L

Best Arabidopsis Sequence Match ( AT1G60440.1 )
(BLAST)

001: MDPTQISHLA LDIGGTLIKL VYFSANGDYS EESRNGCSVV KGRLCFAKFE TRKIDDCLEF IRFNILHHSG VQQPNGEGHD KLYVKATGGG AFKFADLFKE
101: KLGILFDKED EMCSLVGGVN FLLKTVPREA FTYLDGQKKF VEIDHNDLYP YLLVNIGSGV SMIKVDGDGK YERISGTSLG GGTFLGLGKL LTKCKSFDEL
201: LELSHHGNNR VIDMLVGDIY GGTDYSKIGL SSTAIASSFG KAISDGKELE DYQPEDVARS LLRMISNNIG QIAYLNALRF GLKRIFFGGF FIRGLEYTMD
301: TISVAVHFWS RGEAKAMFLR HEGFLGALGA FTSYNDQSHN DLKPHHHTVQ RAILNCSGHN FRHIPVTSNL NESETIECSI NLV

Arabidopsis Description

PANK1Pantothenate kinase 1 [Source:UniProtKB/Swiss-Prot;Acc:O80765]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.