CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY40427
CDY47225
CDY53055

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60440.1	CDY40427	AT1G60440.1	21798944
AT1G60440.1	CDY47225	AT1G60440.1	21798944
AT1G60440.1	CDY53055	AT1G60440.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G60440.1	Thale cress	cytosol	79.53	61.88
CDY24491	Canola	cytosol	11.07	51.56
VIT_01s0127g00490.t01	Wine grape	cytosol	67.79	48.21
CDY53055	Canola	cytosol	90.94	46.56
KRG99350	Soybean	cytosol	63.76	46.0
Solyc05g005250.2.1	Tomato	cytosol	64.43	45.07
PGSC0003DMT400035152	Potato	cytosol	63.76	44.6
CDY47225	Canola	cytosol	85.23	43.72
KRH45653	Soybean	cytosol	59.73	41.49
GSMUA_Achr6P09090_001	Banana	cytosol	60.74	38.92
TraesCS7D01G167900.1	Wheat	cytosol	45.97	20.95
TraesCS7A01G167300.1	Wheat	cytosol	45.64	20.8
TraesCS7B01G071900.3	Wheat	cytosol	45.3	20.64
KXG19566	Sorghum	cytosol	45.64	20.51
Zm00001d044985_P006	Maize	cytosol, extracellular	44.97	20.43
Os06t0207000-01	Rice	cytosol	45.64	20.42
CDX68824	Canola	cytosol	61.07	20.09
CDY61390	Canola	cytosol	60.4	20.02
CDX75226	Canola	cytosol	61.07	20.0
HORVU5Hr1G033110.2	Barley	cytosol	27.18	18.16
CDX75497	Canola	cytosol	12.08	9.81
CDX87995	Canola	cytosol	11.74	9.7
CDY07861	Canola	cytosol	11.74	9.64
CDX69133	Canola	cytosol	11.74	9.54

Protein Annotations

KEGG:00770+2.7.1.33	Gene3D:1.10.8.780	Gene3D:3.30.420.40	Gene3D:3.30.420.510	MapMan:7.4.2	GO:A0A078HRG3
UniProt:A0A078HRG3	EnsemblPlants:CDY40427	ProteinID:CDY40427	ProteinID:CDY40427.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004594	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015937	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00069640001	PFAM:PF03630	PANTHER:PTHR12280	PANTHER:PTHR12280:SF44	MetaCyc:PWY-3961
SUPFAM:SSF53067	TIGRFAMs:TIGR00555	InterPro:Type_II_PanK	UniPathway:UPA00241	UniParc:UPI0004EF28C7	SEG:seg

Description

BnaA04g20900DBnaA04g20900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRG3]

Coordinates

chrLK032470:+:108900..110663

Molecular Weight (calculated)

32368.7 Da

IEP (calculated)

5.361

GRAVY (calculated)

-0.090

Length

298 amino acids

Sequence
(BLAST)

001: MIVETGMDPK DSLFSTQISH LALDIGGTLI KLVYFSPNGD NCEDGSIVVG NNGCSAVQGR LCFAKFETRK IDDCLDFIRL NILQHSGVQH TNGTARDKLS
101: VKATGGGAFK FADLFKEKLG IVFDKEDEMH SLVCGVNFLL KTVPREAFTY LDGQKEFVQI DHNDLYPYLL VNIGSGVSMI KVDGDGKYER ISGTSLGGGT
201: FLGLGKLLTN CKSFDELLEL SHQGNNRVID MLVGDIYGGT DYSKIGLSST AIASSFGKAI SDGKELEDYQ PEDVARSLLR MISNNIGQVG SCKHFHAL

Best Arabidopsis Sequence Match ( AT1G60440.1 )
(BLAST)

001: MDPTQISHLA LDIGGTLIKL VYFSANGDYS EESRNGCSVV KGRLCFAKFE TRKIDDCLEF IRFNILHHSG VQQPNGEGHD KLYVKATGGG AFKFADLFKE
101: KLGILFDKED EMCSLVGGVN FLLKTVPREA FTYLDGQKKF VEIDHNDLYP YLLVNIGSGV SMIKVDGDGK YERISGTSLG GGTFLGLGKL LTKCKSFDEL
201: LELSHHGNNR VIDMLVGDIY GGTDYSKIGL SSTAIASSFG KAISDGKELE DYQPEDVARS LLRMISNNIG QIAYLNALRF GLKRIFFGGF FIRGLEYTMD
301: TISVAVHFWS RGEAKAMFLR HEGFLGALGA FTSYNDQSHN DLKPHHHTVQ RAILNCSGHN FRHIPVTSNL NESETIECSI NLV

Arabidopsis Description

PANK1Pantothenate kinase 1 [Source:UniProtKB/Swiss-Prot;Acc:O80765]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.