Factsheet for VIT_06s0004g03450.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22944	Soybean	cytosol	87.04	86.83
PGSC0003DMT400065278	Potato	cytosol	86.06	85.96
KRH10401	Soybean	cytosol, endoplasmic reticulum	86.31	85.89
Solyc11g072530.1.1	Tomato	cytosol	85.94	85.84
PGSC0003DMT400019381	Potato	cytosol	85.09	85.09
Solyc06g075400.2.1	Tomato	cytosol	85.09	85.09
KRH24948	Soybean	cytosol	84.47	84.47
KRG89062	Soybean	cytosol, endoplasmic reticulum	83.99	83.99
AT2G28520.1	Thale cress	cytosol	82.15	82.25
CDY15756	Canola	cytosol	79.83	81.73
CDY04571	Canola	cytosol	79.22	81.61
CDY53381	Canola	cytosol	79.22	81.1
CDX83292	Canola	cytosol	81.42	80.92
CDX77187	Canola	cytosol	78.36	80.73
Bra011941.1-P	Field mustard	cytosol	80.2	79.9
Bra035693.1-P	Field mustard	cytosol	79.58	79.39
CDY63878	Canola	cytosol, plasma membrane, plastid	81.66	78.59
CDX83291	Canola	cytosol	16.38	73.63
VIT_13s0175g00200.t01	Wine grape	cytosol	16.26	69.27
Bra000490.1-P	Field mustard	cytosol	78.97	67.64
VIT_18s0001g13410.t01	Wine grape	cytosol	65.16	65.97
VIT_03s0038g00290.t01	Wine grape	cytosol	65.4	65.09
VIT_13s0175g00190.t01	Wine grape	extracellular	4.52	58.73

Protein Annotations

EntrezGene:100250193	wikigene:100250193	MapMan:24.1.1.1.1	ProteinID:CBI16252	ProteinID:CBI16252.3	ncoils:Coil
UniProt:D7SKS4	EMBL:FN594951	GO:GO:0000220	GO:GO:0000325	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0006139	GO:GO:0006810	GO:GO:0006811	GO:GO:0007035
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015078	GO:GO:0015986
GO:GO:0015991	GO:GO:0015992	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016471
GO:GO:0016787	GO:GO:0019725	GO:GO:0033179	GO:GO:0046961	GO:GO:0051117	GO:GO:0070072
EntrezGene:LOC100250193	wikigene:LOC100250193	PFAM:PF01496	PIRSF:PIRSF001293	PANTHER:PTHR11629	PANTHER:PTHR11629:SF72
TMHMM:TMhelix	UniParc:UPI0001983704	InterPro:V-ATPase_116kDa_su	InterPro:V-type_ATPase_116kDa_su_euka	ArrayExpress:VIT_06s0004g03450	EnsemblPlantsGene:VIT_06s0004g03450
EnsemblPlants:VIT_06s0004g03450.t01	unigene:Vvi.8309	RefSeq:XP_002282009	RefSeq:XP_002282009.1	SEG:seg	:

Description

V-type proton ATPase subunit a [Source:UniProtKB/TrEMBL;Acc:D7SKS4]

Coordinates

chr6:+:4296110..4318882

Molecular Weight (calculated)

93608.8 Da

IEP (calculated)

6.595

GRAVY (calculated)

0.056

Length

818 amino acids

Sequence
(BLAST)

001: MEFIDNLPPM DLMRSEKMTF VQLIIPVESA HRAVSYLGEL GLLQFRDLNA DKSPFQRTFV NQVKRCGEMA RKLRFFKDQV SKAGLISSAR PDLQPDIELE
101: ELEIQLSEHE HELLEMNSNS EKLRQTYNEL LEFKMVLQKA SGFLVSSKSH AVVEERELDE TAYSKDRYVE TASLLEQEMG PGPSNQSGLR FISGIICKSK
201: ALRFERMLFR ATRGNMLFNQ ATADEHIMDP VSTEMIEKTV FVVFFSGEQA KTKILKICEA FGANCYPVPE DMTKQRQISR EVLARLSELE ATLDAGIRHR
301: NKALSSIGFH LMKWMNMVRR EKAVYDTLNM LNFDVTKKCL VGEGWCPIFA KAQIQEALQR ATFDSNSQVG IIFHVMDAVE SPPTYFRTNR FTNAFQEIVD
401: AYGVARYQEA NPAVYTVITF PFLFAVMFGD WGHGICLLLG ALVLIARESK LSSQKLGSFM EMLFGGRYVL LLMSIFSIYC GLIYNEFFSV PYHIFGGSAY
501: KCRDATCSNS NTVGLIKYQD TYPFGVDPSW RGSRSELPFL NSLKMKMSIL LGVTQMNLGI VLSYFNARFF GSSLDIRYQF VPQVIFLNSL FGYLSLLIII
601: KWCTGSQADL YHVMIYMFLS PTDNLGENQL FWGQRPLQII LLLLALIAVP WMLFPKPFIL KKLHSERFQG RAYGILGTSE MDLEVEPDSA RQHHEEFNFS
701: EIFVHQMIHS IEFVLGAVSN TASYLRLWAL SLAHSELSTV FYEKVLLLAW GYNNFVIRMV GLAVFAFATA FILLMMETLS AFLHALRLHW VEFQNKFYHG
801: DGYKFRPFSF ASLIDDED

Best Arabidopsis Sequence Match ( AT2G28520.1 )
(BLAST)

001: MEEFLDKLPQ MDLMRSEKMT LVQLIIPVES AHRSITYLGE LGLLQFRDLN ADKSPFQRTF ANQVKRCGEM SRKLRFFKDQ IDKAGLRCSP RLEIEPDIAL
101: GDLERQLADH EHEVLEMNSN SEKLRQTYNE LLEFKIVLEK ASGFLVSSNT HAIGEEIELH ESTYSNNGFI ETASLLEQEM NPGHSNQSGL RFISGIINKD
201: KLLKFERMLF RATRGNMLFN QTTSDEEIMD PSTSEMVEKV VFVVFFSGEQ ARTKILKICE AFGANCYPVP EDTTKQRQLT REVLSRLSDL EATLDAGTRH
301: RNNALNSVGY SLTNWITTVR REKAVYDTLN MLNFDVTKKC LVGEGWCPTF AKTQIHEVLQ RATFDSSSQV GVIFHVMQAV ESPPTYFRTN KLTNAFQEII
401: DAYGVARYQE ANPAVYSVVT YPFLFAVMFG DWGHGLCLLL GALYLLARER KLSTQKLGSF MEMLFGGRYV ILLMALFSIY CGLIYNEFFS VPFHIFGGSA
501: YKCRDTTCSD AYTVGLIKYR DPYPFGVDPS WRGSRTELPY LNSLKMKMSI LLGIAQMNLG LILSFFNARF FGSSLDIRYQ FIPQMIFLNS LFGYLSLLII
601: IKWCTGSQAD LYHVMIYMFL SPTEELGENE LFWGQRPLQI VLLLLAFIAV PWMLFPKPFA LRKIHMERFQ GRTYGVLVSS EVDLDVEPDS ARGGGHHEEE
701: FNFSEIFVHQ LIHSIEFVLG SVSNTASYLR LWALSLAHSE LSTVFYEKVL LLAWGYENIL IRLIGVAVFA FATAFILLMM ETLSAFLHAL RLHWVEFMGK
801: FFNGDGYKFK PFSFALI

Arabidopsis Description

VHA-A1V-type proton ATPase subunit a1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.