CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83291	Canola	cytosol	21.75	98.35
CDY53381	Canola	cytosol	94.05	96.87
CDX77187	Canola	cytosol	93.07	96.47
CDY63878	Canola	cytosol, plasma membrane, plastid	99.64	96.47
CDY15756	Canola	cytosol	93.2	96.0
CDY04571	Canola	cytosol	92.59	95.97
AT2G28520.1	Thale cress	cytosol	93.2	93.88
Bra000490.1-P	Field mustard	cytosol	95.87	82.62
VIT_06s0004g03450.t01	Wine grape	cytosol	80.92	81.42
KRH22944	Soybean	cytosol	79.83	80.12
KRH10401	Soybean	cytosol, endoplasmic reticulum	79.47	79.56
PGSC0003DMT400065278	Potato	cytosol	78.49	78.88
Solyc06g075400.2.1	Tomato	cytosol	78.37	78.85
PGSC0003DMT400019381	Potato	cytosol	78.25	78.73
KRH24948	Soybean	cytosol	78.25	78.73
Solyc11g072530.1.1	Tomato	cytosol	78.13	78.51
KRG89062	Soybean	cytosol, endoplasmic reticulum	78.01	78.48
GSMUA_Achr7P22660_001	Banana	cytosol	75.09	76.39
Zm00001d042969_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	21.14	74.04
EES03840	Sorghum	cytosol	72.42	72.86
Zm00001d012446_P002	Maize	cytosol	71.81	72.25
TraesCS3B01G385500.1	Wheat	cytosol	71.2	71.73
TraesCS3D01G346900.1	Wheat	golgi, unclear	71.08	71.6
Os01t0834200-01	Rice	cytosol	71.08	71.52
TraesCS3A01G352800.1	Wheat	cytosol	70.6	71.11
CDY42603	Canola	cytosol	62.09	62.47
CDY41958	Canola	cytosol	61.97	62.42
CDX90307	Canola	cytosol	61.97	62.27
CDY12118	Canola	cytosol	61.73	61.95
CDX99594	Canola	cytosol	61.48	61.48
VIT_13s0175g00200.t01	Wine grape	cytosol	14.34	61.46
CDY15895	Canola	cytosol	61.12	61.42
CDX82029	Canola	cytosol	60.75	60.9
KXG29301	Sorghum	cytosol	3.04	58.14
Zm00001d046282_P001	Maize	cytosol	9.96	56.55
CDY61341	Canola	cytosol	19.56	56.29
Zm00001d040680_P001	Maize	mitochondrion	7.41	53.51
CDY71986	Canola	cytosol	14.46	53.36
CDY13818	Canola	cytosol, nucleus, plastid	50.55	52.07
CDX96169	Canola	cytosol, plasma membrane, plastid	14.46	51.97
CDX80454	Canola	extracellular	4.25	49.3
CDX89488	Canola	cytosol	5.35	32.84

Protein Annotations

MapMan:24.1.1.1.1	GO:A0A078D2E2	EnsemblPlants:CDX83292	ProteinID:CDX83292	ProteinID:CDX83292.1	ncoils:Coil
GO:GO:0000220	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0006810	GO:GO:0008150	GO:GO:0015078	GO:GO:0015991
GO:GO:0016020	GO:GO:0033179	EnsemblPlantsGene:GSBRNA2T00138847001	PFAM:PF01496	PIRSF:PIRSF001293	PANTHER:PTHR11629
PANTHER:PTHR11629:SF72	TMHMM:TMhelix	UniParc:UPI0004EEEB3E	InterPro:V-ATPase_116kDa_su	InterPro:V-type_ATPase_116kDa_su_euka	SEG:seg

Description

BnaA03g22140D

Coordinates

chrLK031832:+:880919..886557

Molecular Weight (calculated)

94341.4 Da

IEP (calculated)

6.245

GRAVY (calculated)

0.011

Length

823 amino acids

Sequence
(BLAST)

001: MDDFLDKLPQ MDLMRSEKMT LVQLIIPVES AHRSVTYLGE LGLLQFRDLN ADKSPFQRTF ATQVKRCGEM SRKLRFFKDQ IDKAGLRCLQ RHELEPNIEL
101: GDLERQLADH EHEVLEMNSN SEKLRQTYNE LLEFKIVLQK ASGFLVSSNA HAIGDETELH ESTYSNNGFI ESSSLLEQEM RPEPLNQSGL RFISGIINKD
201: KLLRFERMLF RATRGNMLFN QTPSDEEIMD PSTSEMVEKN VFVVFFSGEQ ARTKILKICE AFGANCYPVP EDIIKQRQLT REVLSRLSDL EATLDAGSRH
301: RNNALNAVGY SLTKWMTTVR REKAVYDTLN MLNFDVTKKC LVGEGWCPTF AKTQIHEVLQ RATSDSNSQV GVIFHVMHAV ESPPTYFRTN KLTNAFQEII
401: DAYGVARYQE ANPAVYSVVT YPFLFAVMFG DWGHGLCLLL GALYLLARER KLSKQKLGSF MEMLFGGRYV ILLMALFSIY CGLIYNEFFS VPFHIFGGSA
501: YKCRDTTCSD AYTAGLVKYR DPYPFGVDPS WRGSRSELPY LNSLKMKMSI LLGIAQMNLG LILSFFNARF FGSSLDIRYQ FIPQMIFLNS LFGYLSLLII
601: IKWCTGSQAD LYHVMIYMFL SPTEELGENE LFWGQPFAPS LLILLLLLAF IAVPWMLFPK PFALRKIHME RFQGRTYGLL GTSEVDLDVE PDSARSHQEE
701: EFNFSEIFVH QLIHSIEFVL GSVSNTASYL RLWALSLAHS ELSTVFYEKV LLLAWGYENI LIRLIGVVVF AFATAFILLM METLSAFLHA LRLHWVEFMG
801: KFFHGDGYKF KPFSFTLISD DDE

Best Arabidopsis Sequence Match ( AT2G28520.1 )
(BLAST)

001: MEEFLDKLPQ MDLMRSEKMT LVQLIIPVES AHRSITYLGE LGLLQFRDLN ADKSPFQRTF ANQVKRCGEM SRKLRFFKDQ IDKAGLRCSP RLEIEPDIAL
101: GDLERQLADH EHEVLEMNSN SEKLRQTYNE LLEFKIVLEK ASGFLVSSNT HAIGEEIELH ESTYSNNGFI ETASLLEQEM NPGHSNQSGL RFISGIINKD
201: KLLKFERMLF RATRGNMLFN QTTSDEEIMD PSTSEMVEKV VFVVFFSGEQ ARTKILKICE AFGANCYPVP EDTTKQRQLT REVLSRLSDL EATLDAGTRH
301: RNNALNSVGY SLTNWITTVR REKAVYDTLN MLNFDVTKKC LVGEGWCPTF AKTQIHEVLQ RATFDSSSQV GVIFHVMQAV ESPPTYFRTN KLTNAFQEII
401: DAYGVARYQE ANPAVYSVVT YPFLFAVMFG DWGHGLCLLL GALYLLARER KLSTQKLGSF MEMLFGGRYV ILLMALFSIY CGLIYNEFFS VPFHIFGGSA
501: YKCRDTTCSD AYTVGLIKYR DPYPFGVDPS WRGSRTELPY LNSLKMKMSI LLGIAQMNLG LILSFFNARF FGSSLDIRYQ FIPQMIFLNS LFGYLSLLII
601: IKWCTGSQAD LYHVMIYMFL SPTEELGENE LFWGQRPLQI VLLLLAFIAV PWMLFPKPFA LRKIHMERFQ GRTYGVLVSS EVDLDVEPDS ARGGGHHEEE
701: FNFSEIFVHQ LIHSIEFVLG SVSNTASYLR LWALSLAHSE LSTVFYEKVL LLAWGYENIL IRLIGVAVFA FATAFILLMM ETLSAFLHAL RLHWVEFMGK
801: FFNGDGYKFK PFSFALI

Arabidopsis Description

VHA-A1V-type proton ATPase subunit a1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.