CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010712.1-P	Field mustard	cytosol	100.0	100.0
CDY12118	Canola	cytosol	99.02	98.9
CDY41958	Canola	cytosol	95.36	95.59
CDY42603	Canola	cytosol	94.38	94.5
AT4G39080.1	Thale cress	cytosol, nucleus, plasma membrane	93.53	93.3
CDY15895	Canola	cytosol	88.03	88.03
CDX99594	Canola	cytosol	88.4	87.97
CDX82029	Canola	cytosol	88.16	87.94
KRH29384	Soybean	endoplasmic reticulum	78.75	78.85
KRH24405	Soybean	endoplasmic reticulum	78.75	78.85
VIT_03s0038g00290.t01	Wine grape	cytosol	78.75	78.47
CDY61341	Canola	cytosol	27.23	77.97
Solyc01g110120.2.1	Tomato	nucleus, plastid	77.9	77.8
CDY13818	Canola	cytosol, nucleus, plastid	75.7	77.6
CDY71986	Canola	cytosol	20.02	73.54
CDX80454	Canola	extracellular	6.11	70.42
CDX96169	Canola	cytosol, plasma membrane, plastid	19.66	70.31
KRG89695	Soybean	extracellular, mitochondrion	5.49	69.23
CDY15756	Canola	cytosol	61.05	62.58
CDY53381	Canola	cytosol	60.93	62.45
CDX83292	Canola	cytosol	62.27	61.97
CDY04571	Canola	cytosol	60.07	61.96
CDX77187	Canola	cytosol	59.71	61.59
CDY63878	Canola	cytosol, plasma membrane, plastid	62.03	59.76
CDX83291	Canola	cytosol	10.74	48.35
CDX89488	Canola	cytosol	7.81	47.76

Protein Annotations

MapMan:24.1.1.1.1	GO:A0A078DMP8	EnsemblPlants:CDX90307	ProteinID:CDX90307	ProteinID:CDX90307.1	ncoils:Coil
GO:GO:0000220	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0006810	GO:GO:0008150	GO:GO:0015078	GO:GO:0015991
GO:GO:0016020	GO:GO:0033179	EnsemblPlantsGene:GSBRNA2T00150888001	PFAM:PF01496	PIRSF:PIRSF001293	PANTHER:PTHR11629
PANTHER:PTHR11629:SF89	TMHMM:TMhelix	UniParc:UPI0002546972	InterPro:V-ATPase_116kDa_su	InterPro:V-type_ATPase_116kDa_su_euka	SEG:seg

Description

BnaA08g16770D

Coordinates

chrLK031862:+:1176594..1181908

Molecular Weight (calculated)

92793.8 Da

IEP (calculated)

5.969

GRAVY (calculated)

0.043

Length

819 amino acids

Sequence
(BLAST)

001: MAENGGGGCC PPMDLMRSEP MQLVQLIVPM ESAHLTVSYL GDLGLVQFKD LNSEKSPFQR TYAAQIKRCG EMARKIRFFK DQMSKAGVLP KEMLGKENDI
101: DLDDVEVKLG ELEAELVEIN ANNDKLQRSY NELMEYKLVL EKAGEFFSSA HRSATAQQRE TESPRASEDL LESPLLQEEK SIDASKQVKL GFLTGLVPRE
201: KSMVFERILF RATRGNVYIR QTVVEETVID PNSGEKAEKN VFVVFYSGER AKSKILKICE AFGANRYPFS EDLRKQAQMI TEVSGRLTEL KTTIDAGLGH
301: RNILLQTIGD KFELWSLKVR KEKAIYHTLN MLSLDVTKKC LVAEGWSPVF ASKEIQEALE RAAVDSNSQV GSIFQILRTK ELPPTYFRTN KFTSAIQEIV
401: DAYGVAKYQE ANPGVFTIVT FPFLFAVMFG DWGHGICLLL ATMYLIVREK KLASQKLGDI MEMAFGGRYV IMMMSLFSIY TGLIYNEFFS IPYPLFAPSA
501: YDCRDASCSE ATTIGLIKVR DTYPFGLDPV WHGTRSELPF LNSLKMKMSI LLGVSQMNLG IIMSYFNARF FKSSVNIWFQ FIPQMIFLNS LFGYLSVLII
601: IKWCTGSQAD LYHVMIYMFL SPTDELGENQ LFPHQKTVQL VLLFLALVSV PCMLLPKPFI LKKQHEARHQ GQSYAPLEET DESLHVETSG GGHGHEEFEF
701: SEIFVHQLIH TIEFVLGAVS NTASYLRLWA LSLAHSELSS VFYEKVLLLA WGYNNWLILI VGIIVFVFAT VGVLLVMETL SAFLHALRLH WVEFQNKFYE
801: GDGYKFAPFS FILTASEDE

Best Arabidopsis Sequence Match ( AT4G39080.1 )
(BLAST)

001: MAESGGGGGC CPPMDLMRSE TMQLVQLIVP MESAHLTVSY LGDLGLVQFK DLNSEKSPFQ RTYAAQIKRC GEMARKIRFF RDQMSKAGVP AKEMQGKEND
101: IDLDDVEVKL GELEAELVEI NANNDKLQRS YNELMEYKLV LQKAGEFFSS AHRSAADQQR ETESQQAGED LLESPLLQEE KSIDSTKQVK LGFLTGLVPR
201: EKSMVFERIL FRATRGNIFI RQTVIEEPVI DPNSGEKAEK NVFVVFYSGE RAKSKILKIC EAFGANRYPF SEDLGRQAQM ITEVSGRLSE LKTTIDAGLG
301: QRNILLQTIG DKFELWNLKV RKEKAIYHTL NMLSLDVTKK CLVAEGWSPV FASREIQDAL QRAAVDSNSQ VGSIFQVLRT KESPPTYFRT NKFTSAIQEI
401: VDAYGVAKYQ EANPGVFTIV TFPFLFAVMF GDWGHGICIL LATMYLILKE KKLASQKLGD IMEMAFGGRY VILMMSLFSI YTGLIYNEFF SIPFPLFAPS
501: AYDCRDVSCS EATTIGLIKV RDTYPFGLDP VWHGSRSELP FLNSLKMKMS ILLGVSQMNL GIIMSYFNAR FFKSSVNIWF QFIPQMIFLN SLFGYLSVLI
601: IIKWCTGSQA DLYHVMIYMF LSPMDELGEN QLFPHQKTLQ LVLLFLALVS VPCMLLPKPF ILKKQHEARH QGQAYAPLDE TDESLHVETN GGGSHGHEEF
701: EFSEIFVHQL IHTIEFVLGA VSNTASYLRL WALSLAHSEL SSVFYEKVLL LAWGYNNPLI LIVGVLVFIF ATVGVLLVME TLSAFLHALR LHWVEFQNKF
801: YEGDGYKFAP FTFIFTANED E

Arabidopsis Description

VHA-A3V-type proton ATPase subunit a3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4S4]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.