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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • cytosol 3
  • plasma membrane 2
  • nucleus 1
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:cytosol
EpiLoc:plasma membrane
MultiLoc:cytosol
Plant-mPloc:nucleus, plasma membrane
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
 endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH24405 Soybean endoplasmic reticulum 98.41 98.41
VIT_03s0038g00290.t01 Wine grape cytosol 81.05 80.66
Os10t0184300-01 Rice plasma membrane 10.27 80.0
CDY42603 Canola cytosol 78.85 78.85
Bra010712.1-P Field mustard cytosol 78.85 78.75
CDX90307 Canola cytosol 78.85 78.75
CDY41958 Canola cytosol 78.61 78.7
CDY12118 Canola cytosol 78.73 78.54
Bra011878.1-P Field mustard cytosol 71.15 77.81
Solyc01g110120.2.1 Tomato nucleus, plastid 77.87 77.68
AT4G39080.1 Thale cress cytosol, nucleus, plasma membrane 77.63 77.34
CDY15895 Canola cytosol 77.14 77.05
CDX99594 Canola cytosol 77.51 77.04
Bra030300.1-P Field mustard cytosol 76.89 76.89
CDX82029 Canola cytosol 76.89 76.61
Bra031187.1-P Field mustard cytosol 76.77 76.49
AT2G21410.1 Thale cress cytosol 76.65 76.37
GSMUA_Achr5P18710_001 Banana cytosol, extracellular 75.31 76.24
Zm00001d047910_P001 Maize plasma membrane 75.18 75.0
Zm00001d028436_P001 Maize mitochondrion, plastid 74.94 74.57
EER95168 Sorghum cytosol 74.82 74.45
KRH51766 Soybean endoplasmic reticulum 73.72 73.99
Os03t0251500-01 Rice plasma membrane 73.59 73.41
TraesCS4D01G223300.2 Wheat cytosol 73.35 73.08
TraesCS4B01G222700.3 Wheat cytosol 73.59 72.79
TraesCS4A01G081100.1 Wheat cytosol 72.98 72.72
KRG89695 Soybean extracellular, mitochondrion 5.75 72.31
KRH61086 Soybean cytosol, mitochondrion 58.92 70.78
TraesCS2B01G520900.1 Wheat cytosol 70.54 70.45
HORVU2Hr1G109990.2 Barley vacuole 70.42 70.33
TraesCS2D01G493000.1 Wheat cytosol 70.29 70.21
TraesCS2A01G492800.1 Wheat cytosol 69.8 69.72
CDY61341 Canola cytosol 23.47 67.13
CDY13818 Canola cytosol, nucleus, plastid 64.43 65.96
CDY71986 Canola cytosol 17.97 65.92
HORVU4Hr1G062880.3 Barley plasma membrane, vacuole 72.74 64.19
KRH22944 Soybean cytosol 64.18 64.02
KRH24948 Soybean cytosol 63.69 63.69
CDX96169 Canola cytosol, plasma membrane, plastid 17.73 63.32
KRG89062 Soybean cytosol, endoplasmic reticulum 63.08 63.08
KRH10401 Soybean cytosol, endoplasmic reticulum 63.33 63.02
Protein Annotations
EntrezGene:100783125MapMan:24.1.1.1.1EMBL:ACUP02006800ncoils:CoilEnsemblPlantsGene:GLYMA_11G113400GO:GO:0000220
GO:GO:0000325GO:GO:0003674GO:GO:0003824GO:GO:0005215GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005773GO:GO:0006139
GO:GO:0006810GO:GO:0006811GO:GO:0007035GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0015078GO:GO:0015986GO:GO:0015991GO:GO:0015992GO:GO:0016020
GO:GO:0016021GO:GO:0016043GO:GO:0016471GO:GO:0016787GO:GO:0019725GO:GO:0033179
GO:GO:0046961GO:GO:0051117GO:GO:0070072UniProt:I1LJ94EnsemblPlants:KRH29384ProteinID:KRH29384
ProteinID:KRH29384.1PFAM:PF01496PIRSF:PIRSF001293PANTHER:PTHR11629PANTHER:PTHR11629:SF89TMHMM:TMhelix
UniParc:UPI000233CCB0InterPro:V-ATPase_116kDa_suInterPro:V-type_ATPase_116kDa_su_eukaSEG:seg::
Description
hypothetical protein
Coordinates
chr11:+:8674926..8685149
Molecular Weight (calculated)
92979.6 Da
IEP (calculated)
6.104
GRAVY (calculated)
0.055
Length
818 amino acids
Sequence
(BLAST)
001: MGEVARGGCC PPMDLFRSEP MQLVQLIIPI ESAHRTVSYL GDLGLLQFKD LNADKSPFQR TYAAQIRRSG EMARRLRFFK EQMLKAGVSP KYSTTPVDVN
101: IDDLEVKLTE IESELTEMNA NGEKLQRSYN ELVEYKLVLQ KAGEFFHSAQ SRALEQQREQ ESCHLSGESI ETPLLQDQEL SVDSSKQVKL GFLAGLVPRE
201: KSMVFERILF RATRGNVFLR QATVEDPVTD PVSGEKTEKN VFVVFYAGEK AKAKILKICE AFGANRYPFA EELGKQAQMI TEVSGRLLEL KTTLDAGLLH
301: RNNLLNTIGA QFEQWDVLVR KEKSIHHTLN MLSLDVTKKC LVAEGWSPVF ATKQIQEALQ RAALDSNSQV NAIFQVLQTR ELPPTYFRTN KFTSSFQGII
401: DSYGVAKYQE ANPTVYTVVT FPFLFAVMFG DWGHGICLLL AALYFIIREK KLSSQKLDDI TEMTFGGRYV ILLMAIFSIY TGFIYNEFFS VPFAIFAPSA
501: YDCRDLSCRD ATTVGLIKVR DTYPFGVDPV WHGTRSELPF LNSLKMKMSI LLGVAQMNLG IVMSYFNAIF FRNSVNVWFQ FIPQMIFLNS LFGYLSLLII
601: VKWATGSQAD LYHILIYMFL SPTDDLGENQ LFAGQKNLQL VLLLLAVISV PWMLLPKPFI LKKQHEARHG VESYAPLQST DESLQVESNH DSHGHEEFEF
701: SEVFVHQLIH TIEFVLGAVS NTASYLRLWA LSLAHSELSS VFYEKVLMMA WGYNNVIILI VGLIVFIFAT VGVLLVMETL SAFLHALRLH WVEFQNKFYE
801: GDGYKFHPFS FSWLDDEE
Best Arabidopsis Sequence Match ( AT4G39080.1 )
(BLAST)
001: MAESGGGGGC CPPMDLMRSE TMQLVQLIVP MESAHLTVSY LGDLGLVQFK DLNSEKSPFQ RTYAAQIKRC GEMARKIRFF RDQMSKAGVP AKEMQGKEND
101: IDLDDVEVKL GELEAELVEI NANNDKLQRS YNELMEYKLV LQKAGEFFSS AHRSAADQQR ETESQQAGED LLESPLLQEE KSIDSTKQVK LGFLTGLVPR
201: EKSMVFERIL FRATRGNIFI RQTVIEEPVI DPNSGEKAEK NVFVVFYSGE RAKSKILKIC EAFGANRYPF SEDLGRQAQM ITEVSGRLSE LKTTIDAGLG
301: QRNILLQTIG DKFELWNLKV RKEKAIYHTL NMLSLDVTKK CLVAEGWSPV FASREIQDAL QRAAVDSNSQ VGSIFQVLRT KESPPTYFRT NKFTSAIQEI
401: VDAYGVAKYQ EANPGVFTIV TFPFLFAVMF GDWGHGICIL LATMYLILKE KKLASQKLGD IMEMAFGGRY VILMMSLFSI YTGLIYNEFF SIPFPLFAPS
501: AYDCRDVSCS EATTIGLIKV RDTYPFGLDP VWHGSRSELP FLNSLKMKMS ILLGVSQMNL GIIMSYFNAR FFKSSVNIWF QFIPQMIFLN SLFGYLSVLI
601: IIKWCTGSQA DLYHVMIYMF LSPMDELGEN QLFPHQKTLQ LVLLFLALVS VPCMLLPKPF ILKKQHEARH QGQAYAPLDE TDESLHVETN GGGSHGHEEF
701: EFSEIFVHQL IHTIEFVLGA VSNTASYLRL WALSLAHSEL SSVFYEKVLL LAWGYNNPLI LIVGVLVFIF ATVGVLLVME TLSAFLHALR LHWVEFQNKF
801: YEGDGYKFAP FTFIFTANED E
Arabidopsis Description
VHA-A3V-type proton ATPase subunit a3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4S4]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.