Factsheet for Zm00001d028436_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

mitochondrion 2
cytosol 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plasma membrane
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95168	Sorghum	cytosol	95.13	95.13
Zm00001d047910_P001	Maize	plasma membrane	94.53	94.76
Os03t0251500-01	Rice	plasma membrane	86.62	86.83
TraesCS4D01G223300.2	Wheat	cytosol	85.77	85.87
TraesCS4A01G081100.1	Wheat	cytosol	85.52	85.63
TraesCS4B01G222700.3	Wheat	cytosol	85.89	85.37
GSMUA_Achr5P18710_001	Banana	cytosol, extracellular	80.66	82.05
VIT_03s0038g00290.t01	Wine grape	cytosol	77.37	77.37
AT4G39080.1	Thale cress	cytosol, nucleus, plasma membrane	75.91	76.0
Bra010712.1-P	Field mustard	cytosol	75.43	75.7
HORVU4Hr1G062880.3	Barley	plasma membrane, vacuole	85.04	75.4
KRH24405	Soybean	endoplasmic reticulum	74.94	75.31
VIT_18s0001g13410.t01	Wine grape	cytosol	73.97	75.25
AT2G21410.1	Thale cress	cytosol	75.06	75.15
Bra011878.1-P	Field mustard	cytosol	68.25	75.0
PGSC0003DMT400071849	Potato	cytosol	74.57	74.94
KRH29384	Soybean	endoplasmic reticulum	74.57	74.94
Solyc07g032080.2.1	Tomato	plastid	74.45	74.82
Bra031187.1-P	Field mustard	cytosol	74.7	74.79
Solyc01g110120.2.1	Tomato	nucleus, plastid	74.45	74.63
Bra030300.1-P	Field mustard	cytosol	74.09	74.45
KRH51766	Soybean	endoplasmic reticulum	72.02	72.64
KRG89695	Soybean	extracellular, mitochondrion	5.72	72.31
KRH61086	Soybean	cytosol, mitochondrion	58.03	70.04
CDX80454	Canola	extracellular	5.6	64.79
Zm00001d042969_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	18.49	64.68
Zm00001d012446_P002	Maize	cytosol	61.56	61.86
CDX89488	Canola	cytosol	7.42	45.52
Zm00001d046282_P001	Maize	cytosol	7.18	40.69
Zm00001d040680_P001	Maize	mitochondrion	5.11	36.84

Protein Annotations

EntrezGene:100381766	MapMan:24.1.1.1.1	UniProt:A0A1D6JW69	ncoils:Coil	GO:GO:0000220	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0015078	GO:GO:0015991	GO:GO:0015992
GO:GO:0016020	GO:GO:0016021	GO:GO:0033179	ProteinID:ONL96015.1	PFAM:PF01496	PIRSF:PIRSF001293
PANTHER:PTHR11629	PANTHER:PTHR11629:SF89	TMHMM:TMhelix	UniParc:UPI0002219BFF	InterPro:V-ATPase_116kDa_su	InterPro:V-type_ATPase_116kDa_su_euka
EnsemblPlantsGene:Zm00001d028436	EnsemblPlants:Zm00001d028436_P001	EnsemblPlants:Zm00001d028436_T001	SEG:seg	:	:

Description

V-type proton ATPase subunit a3

Coordinates

chr1:+:34959814..34966593

Molecular Weight (calculated)

92982.8 Da

IEP (calculated)

6.217

GRAVY (calculated)

0.025

Length

822 amino acids

Sequence
(BLAST)

001: MARGGGGGCC PPMDLMRSEA MQLVQVIIPA ESAHLTVSYL GDLGLLQFKD LNIDKSPFQR TYAAQIKRCS EMARKLRFFK EQMSKADITA SPTQLNGTHM
101: DFDELEIKLG ELEAELTEVN ANNEKLQRTY NELLEYHTVL QKAGEFFYSA QRTAAAQQME MEANQSGQTS LESPLLEQEM TTDPSKQVKL GSLSGLVPKE
201: KAMAFERILF RATRGNIFLR QEPVDEPVTD PVSREKVTKN AFVIFYSGER AKTKILKICD AFNANRYPFP EDVGKQLHAV QEVSGKISEL KTTIDMGLAH
301: RDSILKNIAS DFEQWNHLVK KEKAIYHTLN MLSVDVTKKC LVAEGWSPIF ASIQIQDALQ RATLDSKSQV GSIFQVLNTK ESPPTYFQTN KFTSAFQEIV
401: DAYGVAKYQE ANPGVFTIVT FPFLFAVMFG DWGHGICLLL ATLYLIIREK KLASQKLGDI MEMMFGGRYV IMMMAVFSIY TGLIYNEFFS VPFGLFGKSA
501: YACRDSSCSD ATTEGLLKVR DAYPFGVDPV WHGSRSELPF LNSLKMKMSI LLGVAQMNLG IVISYFNAKF FRNSINVWYQ FIPQLIFLNS LFGYLSLLII
601: IKWCTGSKAD LYHVMIYMFL SPTDDLSENQ LFSGQKTVQL VLLLLALVSV PWMLIPKPLL LKKQHQQRHQ GHQYAMLQGI DESVGAELGE HHEDAHDHEE
701: FEFGEVFVHQ LIHTIEFVLG AVSNTASYLR LWALSLAHSE LSTVFYEKVL MTAYGFNNVF ILIIGVVIFI FATIGVLLVM ETLSAFLHAL RLHWVEFQNK
801: FYEGDGYKFA PFSFALIREE ED

Best Arabidopsis Sequence Match ( AT4G39080.1 )
(BLAST)

001: MAESGGGGGC CPPMDLMRSE TMQLVQLIVP MESAHLTVSY LGDLGLVQFK DLNSEKSPFQ RTYAAQIKRC GEMARKIRFF RDQMSKAGVP AKEMQGKEND
101: IDLDDVEVKL GELEAELVEI NANNDKLQRS YNELMEYKLV LQKAGEFFSS AHRSAADQQR ETESQQAGED LLESPLLQEE KSIDSTKQVK LGFLTGLVPR
201: EKSMVFERIL FRATRGNIFI RQTVIEEPVI DPNSGEKAEK NVFVVFYSGE RAKSKILKIC EAFGANRYPF SEDLGRQAQM ITEVSGRLSE LKTTIDAGLG
301: QRNILLQTIG DKFELWNLKV RKEKAIYHTL NMLSLDVTKK CLVAEGWSPV FASREIQDAL QRAAVDSNSQ VGSIFQVLRT KESPPTYFRT NKFTSAIQEI
401: VDAYGVAKYQ EANPGVFTIV TFPFLFAVMF GDWGHGICIL LATMYLILKE KKLASQKLGD IMEMAFGGRY VILMMSLFSI YTGLIYNEFF SIPFPLFAPS
501: AYDCRDVSCS EATTIGLIKV RDTYPFGLDP VWHGSRSELP FLNSLKMKMS ILLGVSQMNL GIIMSYFNAR FFKSSVNIWF QFIPQMIFLN SLFGYLSVLI
601: IIKWCTGSQA DLYHVMIYMF LSPMDELGEN QLFPHQKTLQ LVLLFLALVS VPCMLLPKPF ILKKQHEARH QGQAYAPLDE TDESLHVETN GGGSHGHEEF
701: EFSEIFVHQL IHTIEFVLGA VSNTASYLRL WALSLAHSEL SSVFYEKVLL LAWGYNNPLI LIVGVLVFIF ATVGVLLVME TLSAFLHALR LHWVEFQNKF
801: YEGDGYKFAP FTFIFTANED E

Arabidopsis Description

VHA-A3V-type proton ATPase subunit a3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4S4]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.