CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 3
mitochondrion 2
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61086	Soybean	cytosol, mitochondrion	77.3	92.51
VIT_18s0001g13410.t01	Wine grape	cytosol	78.28	78.96
PGSC0003DMT400071849	Potato	cytosol	77.18	76.89
Solyc07g032080.2.1	Tomato	plastid	77.06	76.77
GSMUA_Achr5P18710_001	Banana	cytosol, extracellular	75.34	75.99
Os10t0184300-01	Rice	plasma membrane	9.57	74.29
KRH29384	Soybean	endoplasmic reticulum	73.99	73.72
KRH24405	Soybean	endoplasmic reticulum	73.99	73.72
Zm00001d047910_P001	Maize	plasma membrane	73.25	72.8
EER95168	Sorghum	cytosol	73.01	72.38
TraesCS4D01G223300.2	Wheat	cytosol	72.88	72.35
TraesCS4A01G081100.1	Wheat	cytosol	72.76	72.23
Zm00001d028436_P001	Maize	mitochondrion, plastid	72.64	72.02
Os03t0251500-01	Rice	plasma membrane	72.39	71.95
TraesCS4B01G222700.3	Wheat	cytosol	72.88	71.83
KRG89695	Soybean	extracellular, mitochondrion	5.64	70.77
TraesCS2B01G520900.1	Wheat	cytosol	69.45	69.11
HORVU2Hr1G109990.2	Barley	vacuole	69.2	68.86
TraesCS2D01G493000.1	Wheat	cytosol	68.83	68.5
TraesCS2A01G492800.1	Wheat	cytosol	68.59	68.25
HORVU4Hr1G062880.3	Barley	plasma membrane, vacuole	72.02	63.32
KRG89062	Soybean	cytosol, endoplasmic reticulum	63.31	63.08
KRH22944	Soybean	cytosol	63.31	62.93
KRH24948	Soybean	cytosol	62.94	62.71
KRH10401	Soybean	cytosol, endoplasmic reticulum	63.19	62.65

Protein Annotations

EntrezGene:100805813	MapMan:24.1.1.1.1	EMBL:ACUP02003389	ncoils:Coil	EnsemblPlantsGene:GLYMA_06G027600	GO:GO:0000220
GO:GO:0000325	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006139
GO:GO:0006810	GO:GO:0006811	GO:GO:0007035	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015078	GO:GO:0015986	GO:GO:0015991	GO:GO:0015992	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016471	GO:GO:0016787	GO:GO:0019725	GO:GO:0033179
GO:GO:0046961	GO:GO:0051117	GO:GO:0070072	UniProt:I1K7M8	EnsemblPlants:KRH51766	ProteinID:KRH51766
ProteinID:KRH51766.1	PFAM:PF01496	PIRSF:PIRSF001293	PANTHER:PTHR11629	PANTHER:PTHR11629:SF89	TMHMM:TMhelix
UniParc:UPI0002339A56	InterPro:V-ATPase_116kDa_su	InterPro:V-type_ATPase_116kDa_su_euka	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:2147625..2156592

Molecular Weight (calculated)

93312.2 Da

IEP (calculated)

6.588

GRAVY (calculated)

0.042

Length

815 amino acids

Sequence
(BLAST)

001: MVNEGRFLPT MDLLRSEPMQ LVQLIIPIES AHRSISYLGD LGLIQFKDLN ADKSPFQRTY ASQIKRCGEM ARRLRLFKEQ MTKAGVSPST WSTRDNHFDL
101: EHLEVKLEEL EAELLEINAN NEKLQHTYNE LLEYKLVLEK VGEFFSSAKN KAVAQQKELE FQTTVEGSID SPLLLEQEET TTKQIKLRFI SGLVHREKSI
201: PFERIIFRAT RGNVFLKQAV IQHPVLDPLS GEKVHKNVFV VFYSGERVKS KILKICDAFG ANRYPFSDDL SKQFQTIREV SGRLSELKTT IDAGLIHRST
301: LLQTIGYHYE QWSLQLKKEK SIYHTLNMLS INVTKKCLLA EGWCPVFATS QIHKVLERAT MDCSSQVGAI FQVLETKESP PTYFSTNKFT SSFQEIVDAY
401: GIAKYQEANP GVYTIVTFPF LFAVMFGDWG HGICLLLAAL YLIIREKKFA SQKLGDIMEM AFGGRYIIML MALFSIYTGL IYNEFFSVPF ELFGPSAYGC
501: RDSSCRDAST TGFIKVRSTY PFGVDPKWHG TRSELPFLNS LKMKMSILLG VSQMNLGIIM SYFNAKYFEN NINIWYQFVP QIIFLNSLFG YLSLLIIIKW
601: STGSQADLYH VMIYMFLSPT DDLGENQLFV GQKLLQLVLL LLALVAVPWM LVPKPFLLKK QHQERHQGQS YDLLYGTDDP LESESQSIPH DEFDFSEVFV
701: HQLIHTIEFV LGAVSNTASY LRLWALSLAH SELSSVFYDK VLLLAWGYNS TIVLIVGIFV FICATVGVLL LMESLSAFLH ALRLHWVEYQ NKFYEGDGYK
801: FFPFSFTLLT DEDEL

Best Arabidopsis Sequence Match ( AT4G39080.1 )
(BLAST)

001: MAESGGGGGC CPPMDLMRSE TMQLVQLIVP MESAHLTVSY LGDLGLVQFK DLNSEKSPFQ RTYAAQIKRC GEMARKIRFF RDQMSKAGVP AKEMQGKEND
101: IDLDDVEVKL GELEAELVEI NANNDKLQRS YNELMEYKLV LQKAGEFFSS AHRSAADQQR ETESQQAGED LLESPLLQEE KSIDSTKQVK LGFLTGLVPR
201: EKSMVFERIL FRATRGNIFI RQTVIEEPVI DPNSGEKAEK NVFVVFYSGE RAKSKILKIC EAFGANRYPF SEDLGRQAQM ITEVSGRLSE LKTTIDAGLG
301: QRNILLQTIG DKFELWNLKV RKEKAIYHTL NMLSLDVTKK CLVAEGWSPV FASREIQDAL QRAAVDSNSQ VGSIFQVLRT KESPPTYFRT NKFTSAIQEI
401: VDAYGVAKYQ EANPGVFTIV TFPFLFAVMF GDWGHGICIL LATMYLILKE KKLASQKLGD IMEMAFGGRY VILMMSLFSI YTGLIYNEFF SIPFPLFAPS
501: AYDCRDVSCS EATTIGLIKV RDTYPFGLDP VWHGSRSELP FLNSLKMKMS ILLGVSQMNL GIIMSYFNAR FFKSSVNIWF QFIPQMIFLN SLFGYLSVLI
601: IIKWCTGSQA DLYHVMIYMF LSPMDELGEN QLFPHQKTLQ LVLLFLALVS VPCMLLPKPF ILKKQHEARH QGQAYAPLDE TDESLHVETN GGGSHGHEEF
701: EFSEIFVHQL IHTIEFVLGA VSNTASYLRL WALSLAHSEL SSVFYEKVLL LAWGYNNPLI LIVGVLVFIF ATVGVLLVME TLSAFLHALR LHWVEFQNKF
801: YEGDGYKFAP FTFIFTANED E

Arabidopsis Description

VHA-A3V-type proton ATPase subunit a3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4S4]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.