Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
vacuole:
16581873
plasma membrane: 29385242 |
msms PMID:
16581873
doi
University of Zurich, Institute of Plant Biology, CH-8008 Zurich, Switzerland.
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G223300.2 | Wheat | cytosol | 86.84 | 98.05 |
| TraesCS4A01G081100.1 | Wheat | cytosol | 86.52 | 97.69 |
| TraesCS4B01G222700.3 | Wheat | cytosol | 87.06 | 97.58 |
| Zm00001d047910_P001 | Maize | plasma membrane | 76.16 | 86.1 |
| Os03t0251500-01 | Rice | plasma membrane | 75.94 | 85.85 |
| EER95168 | Sorghum | cytosol | 76.05 | 85.77 |
| Zm00001d028436_P001 | Maize | mitochondrion, plastid | 75.4 | 85.04 |
| GSMUA_Achr5P18710_001 | Banana | cytosol, extracellular | 67.75 | 77.72 |
| HORVU2Hr1G109990.2 | Barley | vacuole | 68.61 | 77.66 |
| AT4G39080.1 | Thale cress | cytosol, nucleus, plasma membrane | 66.99 | 75.64 |
| Bra010712.1-P | Field mustard | cytosol | 66.34 | 75.09 |
| Solyc01g110120.2.1 | Tomato | nucleus, plastid | 66.24 | 74.88 |
| VIT_03s0038g00290.t01 | Wine grape | cytosol | 65.8 | 74.21 |
| Bra030300.1-P | Field mustard | cytosol | 65.16 | 73.84 |
| Bra011878.1-P | Field mustard | cytosol | 59.44 | 73.66 |
| AT2G21410.1 | Thale cress | cytosol | 64.94 | 73.33 |
| KRH24405 | Soybean | endoplasmic reticulum | 64.62 | 73.23 |
| Bra031187.1-P | Field mustard | cytosol | 64.62 | 72.96 |
| PGSC0003DMT400071849 | Potato | cytosol | 64.29 | 72.86 |
| Solyc07g032080.2.1 | Tomato | plastid | 64.29 | 72.86 |
| VIT_18s0001g13410.t01 | Wine grape | cytosol | 63.43 | 72.77 |
| KRH29384 | Soybean | endoplasmic reticulum | 64.19 | 72.74 |
| KRH51766 | Soybean | endoplasmic reticulum | 63.32 | 72.02 |
| KRG89695 | Soybean | extracellular, mitochondrion | 4.96 | 70.77 |
| KRH61086 | Soybean | cytosol, mitochondrion | 50.49 | 68.72 |
| CDX80454 | Canola | extracellular | 4.75 | 61.97 |
| CDX89488 | Canola | cytosol | 6.15 | 42.54 |
Protein Annotations
| MapMan:24.1.1.1.1 | UniProt:A0A287PCJ8 | ncoils:Coil | GO:GO:0000220 | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0006810 |
| GO:GO:0006811 | GO:GO:0008150 | GO:GO:0015078 | GO:GO:0015991 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0033179 | EnsemblPlantsGene:HORVU4Hr1G062880 | EnsemblPlants:HORVU4Hr1G062880.3 | PFAM:PF01496 | PIRSF:PIRSF001293 | PANTHER:PTHR11629 |
| PANTHER:PTHR11629:SF89 | TMHMM:TMhelix | UniParc:UPI000B477367 | InterPro:V-ATPase_116kDa_su | InterPro:V-type_ATPase_116kDa_su_euka | SEG:seg |
Description
V-type proton ATPase subunit a [Source:UniProtKB/TrEMBL;Acc:A0A287PCJ8]
Coordinates
chrchr4H:-:525824319..525831691
Molecular Weight (calculated)
104244.0 Da
IEP (calculated)
6.483
GRAVY (calculated)
-0.105
Length
927 amino acids
Sequence
(BLAST)
(BLAST)
001: ILLTATNSSN HKRKLVSGKA KNHSTKPPPP SPLTSGPCAY RSLPAQPRLG IIAHGRQDPA CLILLSPPPC SARRETDRGR AARRPPIPAG EEEEEEEPSP
101: AAGLHAMARS GGGCCPSMDL MRSEAMQLLQ VIIPTESAHL AVSHLGDLGL IQFKDLNADK SPFQRTYAAQ IKRCAEMSRK LRFFKEQMSK AGIQVPPMQS
201: TETPLDFDDM EVKLGELEAE LTEVNANDEK LQRAHNELLE YSTVLQKAGE FFYSAQRSAA AQHRQMEANQ SGETSLESPL LEQDMLTDAS KQVKLGSLSG
301: LVPKEKAMAF ERILFRSTRG NILLRQESVD EPVTDPQSGE KVSKNTFVVF YSGERAKAKI LKICDAFRAN RYPFPEDLAK QTHTVQEVAG KISELKATID
401: MGLAHRDSIL KTIASEFEHW NHLAKKEKSI YHTLNMLSVD VTKKCLVGEG WSPVFATNQV QDALQRATLE SKSQVGSIFQ VLNTKESPPT YFQTNKFTSA
501: FQEIVDAYGV AKYQEANPGV YTIITFPFLF AVMFGDWGHG ICILLATLYL IIREKKFASQ KLGDIMEMMF GGRYIIMMMS IFSIYTGLIY NEFFSVPFEL
601: FAKSAYACRD SSCSDSTTEG LIKVRDTYPF GVDPVWHGSR SELPFLNSLK MKMSILLGVS QMNLGIFMSY FNAKFFRNSV NVWYQFVPQL IFLNSLFGYL
701: SMLIIIKWCT GSKADLYHVM IYMFLSPTDE MGENQLFPGQ KTVQQVLLLL ALVSVPWMLI PKPFFLKWEH ERRHQGHQYA MLEGADESVI AELGDHNEEP
801: NHHEEFEFSE IFVHQLIHTI EFVLGAVSNT ASYLRLWALS LAHSELSTVF YDKVLILTLG YNNILILAIG VVVFICATVG VLLVMETLSA FLHALRLHWV
901: EFQNKFYEGD GYKFAPFSFA LISEDEE
101: AAGLHAMARS GGGCCPSMDL MRSEAMQLLQ VIIPTESAHL AVSHLGDLGL IQFKDLNADK SPFQRTYAAQ IKRCAEMSRK LRFFKEQMSK AGIQVPPMQS
201: TETPLDFDDM EVKLGELEAE LTEVNANDEK LQRAHNELLE YSTVLQKAGE FFYSAQRSAA AQHRQMEANQ SGETSLESPL LEQDMLTDAS KQVKLGSLSG
301: LVPKEKAMAF ERILFRSTRG NILLRQESVD EPVTDPQSGE KVSKNTFVVF YSGERAKAKI LKICDAFRAN RYPFPEDLAK QTHTVQEVAG KISELKATID
401: MGLAHRDSIL KTIASEFEHW NHLAKKEKSI YHTLNMLSVD VTKKCLVGEG WSPVFATNQV QDALQRATLE SKSQVGSIFQ VLNTKESPPT YFQTNKFTSA
501: FQEIVDAYGV AKYQEANPGV YTIITFPFLF AVMFGDWGHG ICILLATLYL IIREKKFASQ KLGDIMEMMF GGRYIIMMMS IFSIYTGLIY NEFFSVPFEL
601: FAKSAYACRD SSCSDSTTEG LIKVRDTYPF GVDPVWHGSR SELPFLNSLK MKMSILLGVS QMNLGIFMSY FNAKFFRNSV NVWYQFVPQL IFLNSLFGYL
701: SMLIIIKWCT GSKADLYHVM IYMFLSPTDE MGENQLFPGQ KTVQQVLLLL ALVSVPWMLI PKPFFLKWEH ERRHQGHQYA MLEGADESVI AELGDHNEEP
801: NHHEEFEFSE IFVHQLIHTI EFVLGAVSNT ASYLRLWALS LAHSELSTVF YDKVLILTLG YNNILILAIG VVVFICATVG VLLVMETLSA FLHALRLHWV
901: EFQNKFYEGD GYKFAPFSFA LISEDEE
001: MAESGGGGGC CPPMDLMRSE TMQLVQLIVP MESAHLTVSY LGDLGLVQFK DLNSEKSPFQ RTYAAQIKRC GEMARKIRFF RDQMSKAGVP AKEMQGKEND
101: IDLDDVEVKL GELEAELVEI NANNDKLQRS YNELMEYKLV LQKAGEFFSS AHRSAADQQR ETESQQAGED LLESPLLQEE KSIDSTKQVK LGFLTGLVPR
201: EKSMVFERIL FRATRGNIFI RQTVIEEPVI DPNSGEKAEK NVFVVFYSGE RAKSKILKIC EAFGANRYPF SEDLGRQAQM ITEVSGRLSE LKTTIDAGLG
301: QRNILLQTIG DKFELWNLKV RKEKAIYHTL NMLSLDVTKK CLVAEGWSPV FASREIQDAL QRAAVDSNSQ VGSIFQVLRT KESPPTYFRT NKFTSAIQEI
401: VDAYGVAKYQ EANPGVFTIV TFPFLFAVMF GDWGHGICIL LATMYLILKE KKLASQKLGD IMEMAFGGRY VILMMSLFSI YTGLIYNEFF SIPFPLFAPS
501: AYDCRDVSCS EATTIGLIKV RDTYPFGLDP VWHGSRSELP FLNSLKMKMS ILLGVSQMNL GIIMSYFNAR FFKSSVNIWF QFIPQMIFLN SLFGYLSVLI
601: IIKWCTGSQA DLYHVMIYMF LSPMDELGEN QLFPHQKTLQ LVLLFLALVS VPCMLLPKPF ILKKQHEARH QGQAYAPLDE TDESLHVETN GGGSHGHEEF
701: EFSEIFVHQL IHTIEFVLGA VSNTASYLRL WALSLAHSEL SSVFYEKVLL LAWGYNNPLI LIVGVLVFIF ATVGVLLVME TLSAFLHALR LHWVEFQNKF
801: YEGDGYKFAP FTFIFTANED E
101: IDLDDVEVKL GELEAELVEI NANNDKLQRS YNELMEYKLV LQKAGEFFSS AHRSAADQQR ETESQQAGED LLESPLLQEE KSIDSTKQVK LGFLTGLVPR
201: EKSMVFERIL FRATRGNIFI RQTVIEEPVI DPNSGEKAEK NVFVVFYSGE RAKSKILKIC EAFGANRYPF SEDLGRQAQM ITEVSGRLSE LKTTIDAGLG
301: QRNILLQTIG DKFELWNLKV RKEKAIYHTL NMLSLDVTKK CLVAEGWSPV FASREIQDAL QRAAVDSNSQ VGSIFQVLRT KESPPTYFRT NKFTSAIQEI
401: VDAYGVAKYQ EANPGVFTIV TFPFLFAVMF GDWGHGICIL LATMYLILKE KKLASQKLGD IMEMAFGGRY VILMMSLFSI YTGLIYNEFF SIPFPLFAPS
501: AYDCRDVSCS EATTIGLIKV RDTYPFGLDP VWHGSRSELP FLNSLKMKMS ILLGVSQMNL GIIMSYFNAR FFKSSVNIWF QFIPQMIFLN SLFGYLSVLI
601: IIKWCTGSQA DLYHVMIYMF LSPMDELGEN QLFPHQKTLQ LVLLFLALVS VPCMLLPKPF ILKKQHEARH QGQAYAPLDE TDESLHVETN GGGSHGHEEF
701: EFSEIFVHQL IHTIEFVLGA VSNTASYLRL WALSLAHSEL SSVFYEKVLL LAWGYNNPLI LIVGVLVFIF ATVGVLLVME TLSAFLHALR LHWVEFQNKF
801: YEGDGYKFAP FTFIFTANED E
Arabidopsis Description
VHA-A3V-type proton ATPase subunit a3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4S4]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.