Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12118 | Canola | cytosol | 93.67 | 93.78 |
| Bra010712.1-P | Field mustard | cytosol | 93.3 | 93.53 |
| CDX90307 | Canola | cytosol | 93.3 | 93.53 |
| CDY41958 | Canola | cytosol | 92.57 | 93.02 |
| CDY42603 | Canola | cytosol | 92.57 | 92.91 |
| Bra011878.1-P | Field mustard | cytosol | 84.17 | 92.38 |
| AT2G21410.1 | Thale cress | cytosol | 89.16 | 89.16 |
| Os10t0184300-01 | Rice | plasma membrane | 10.35 | 80.95 |
| VIT_03s0038g00290.t01 | Wine grape | cytosol | 78.32 | 78.22 |
| KRH24405 | Soybean | endoplasmic reticulum | 77.59 | 77.87 |
| KRH29384 | Soybean | endoplasmic reticulum | 77.34 | 77.63 |
| Solyc01g110120.2.1 | Tomato | nucleus, plastid | 77.1 | 77.2 |
| Zm00001d047910_P001 | Maize | plasma membrane | 76.86 | 76.95 |
| GSMUA_Achr5P18710_001 | Banana | cytosol, extracellular | 75.27 | 76.49 |
| EER95168 | Sorghum | cytosol | 76.49 | 76.4 |
| TraesCS4D01G223300.2 | Wheat | cytosol | 76.25 | 76.25 |
| Os03t0251500-01 | Rice | plasma membrane | 76.13 | 76.22 |
| TraesCS4A01G081100.1 | Wheat | cytosol | 76.0 | 76.0 |
| Zm00001d028436_P001 | Maize | mitochondrion, plastid | 76.0 | 75.91 |
| TraesCS4B01G222700.3 | Wheat | cytosol | 76.13 | 75.57 |
| HORVU2Hr1G109990.2 | Barley | vacuole | 71.5 | 71.67 |
| TraesCS2B01G520900.1 | Wheat | cytosol | 71.25 | 71.43 |
| TraesCS2D01G493000.1 | Wheat | cytosol | 70.89 | 71.06 |
| TraesCS2A01G492800.1 | Wheat | cytosol | 70.52 | 70.7 |
| KRG89695 | Soybean | extracellular, mitochondrion | 5.48 | 69.23 |
| HORVU4Hr1G062880.3 | Barley | plasma membrane, vacuole | 75.64 | 66.99 |
| AT2G28520.1 | Thale cress | cytosol | 62.0 | 62.3 |
Protein Annotations
| MapMan:24.1.1.1.1 | EntrezGene:830063 | UniProt:A0A178V3A8 | ProteinID:AEE87015.1 | EMBL:AK221976 | EMBL:AK227321 |
| EMBL:AK230210 | ArrayExpress:AT4G39080 | EnsemblPlantsGene:AT4G39080 | RefSeq:AT4G39080 | TAIR:AT4G39080 | RefSeq:AT4G39080-TAIR-G |
| EnsemblPlants:AT4G39080.1 | TAIR:AT4G39080.1 | EMBL:AY060557 | Unigene:At.70994 | EMBL:BT002615 | ProteinID:CAB38828.1 |
| ProteinID:CAB80571.1 | ncoils:Coil | GO:GO:0000220 | GO:GO:0000325 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0006139 |
| GO:GO:0006810 | GO:GO:0006811 | GO:GO:0007035 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009678 | GO:GO:0009705 | GO:GO:0009941 | GO:GO:0009987 |
| GO:GO:0015078 | GO:GO:0015986 | GO:GO:0015991 | GO:GO:0015992 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0016471 | GO:GO:0016787 | GO:GO:0019725 | GO:GO:0032119 | GO:GO:0033179 |
| GO:GO:0043181 | GO:GO:0045735 | GO:GO:0046961 | GO:GO:0051117 | GO:GO:0070072 | RefSeq:NP_568051.1 |
| ProteinID:OAP00729.1 | PFAM:PF01496 | PIRSF:PIRSF001293 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005052 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR11629 | PANTHER:PTHR11629:SF89 | UniProt:Q8W4S4 |
| TMHMM:TMhelix | UniParc:UPI00000AC1B0 | InterPro:V-ATPase_116kDa_su | InterPro:V-type_ATPase_116kDa_su_euka | Symbol:VHA-A3 | EMBL:Z29167 |
| SEG:seg | : | : | : | : | : |
Description
VHA-A3V-type proton ATPase subunit a3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4S4]
Coordinates
chr4:+:18209399..18215204
Molecular Weight (calculated)
92838.7 Da
IEP (calculated)
5.774
GRAVY (calculated)
0.033
Length
821 amino acids
Sequence
(BLAST)
(BLAST)
001: MAESGGGGGC CPPMDLMRSE TMQLVQLIVP MESAHLTVSY LGDLGLVQFK DLNSEKSPFQ RTYAAQIKRC GEMARKIRFF RDQMSKAGVP AKEMQGKEND
101: IDLDDVEVKL GELEAELVEI NANNDKLQRS YNELMEYKLV LQKAGEFFSS AHRSAADQQR ETESQQAGED LLESPLLQEE KSIDSTKQVK LGFLTGLVPR
201: EKSMVFERIL FRATRGNIFI RQTVIEEPVI DPNSGEKAEK NVFVVFYSGE RAKSKILKIC EAFGANRYPF SEDLGRQAQM ITEVSGRLSE LKTTIDAGLG
301: QRNILLQTIG DKFELWNLKV RKEKAIYHTL NMLSLDVTKK CLVAEGWSPV FASREIQDAL QRAAVDSNSQ VGSIFQVLRT KESPPTYFRT NKFTSAIQEI
401: VDAYGVAKYQ EANPGVFTIV TFPFLFAVMF GDWGHGICIL LATMYLILKE KKLASQKLGD IMEMAFGGRY VILMMSLFSI YTGLIYNEFF SIPFPLFAPS
501: AYDCRDVSCS EATTIGLIKV RDTYPFGLDP VWHGSRSELP FLNSLKMKMS ILLGVSQMNL GIIMSYFNAR FFKSSVNIWF QFIPQMIFLN SLFGYLSVLI
601: IIKWCTGSQA DLYHVMIYMF LSPMDELGEN QLFPHQKTLQ LVLLFLALVS VPCMLLPKPF ILKKQHEARH QGQAYAPLDE TDESLHVETN GGGSHGHEEF
701: EFSEIFVHQL IHTIEFVLGA VSNTASYLRL WALSLAHSEL SSVFYEKVLL LAWGYNNPLI LIVGVLVFIF ATVGVLLVME TLSAFLHALR LHWVEFQNKF
801: YEGDGYKFAP FTFIFTANED E
101: IDLDDVEVKL GELEAELVEI NANNDKLQRS YNELMEYKLV LQKAGEFFSS AHRSAADQQR ETESQQAGED LLESPLLQEE KSIDSTKQVK LGFLTGLVPR
201: EKSMVFERIL FRATRGNIFI RQTVIEEPVI DPNSGEKAEK NVFVVFYSGE RAKSKILKIC EAFGANRYPF SEDLGRQAQM ITEVSGRLSE LKTTIDAGLG
301: QRNILLQTIG DKFELWNLKV RKEKAIYHTL NMLSLDVTKK CLVAEGWSPV FASREIQDAL QRAAVDSNSQ VGSIFQVLRT KESPPTYFRT NKFTSAIQEI
401: VDAYGVAKYQ EANPGVFTIV TFPFLFAVMF GDWGHGICIL LATMYLILKE KKLASQKLGD IMEMAFGGRY VILMMSLFSI YTGLIYNEFF SIPFPLFAPS
501: AYDCRDVSCS EATTIGLIKV RDTYPFGLDP VWHGSRSELP FLNSLKMKMS ILLGVSQMNL GIIMSYFNAR FFKSSVNIWF QFIPQMIFLN SLFGYLSVLI
601: IIKWCTGSQA DLYHVMIYMF LSPMDELGEN QLFPHQKTLQ LVLLFLALVS VPCMLLPKPF ILKKQHEARH QGQAYAPLDE TDESLHVETN GGGSHGHEEF
701: EFSEIFVHQL IHTIEFVLGA VSNTASYLRL WALSLAHSEL SSVFYEKVLL LAWGYNNPLI LIVGVLVFIF ATVGVLLVME TLSAFLHALR LHWVEFQNKF
801: YEGDGYKFAP FTFIFTANED E
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.