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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • plasma membrane 2
  • mitochondrion 2
  • plastid 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d047910_P001 Maize plasma membrane 95.62 95.85
Zm00001d028436_P001 Maize mitochondrion, plastid 95.13 95.13
Os03t0251500-01 Rice plasma membrane 87.47 87.68
TraesCS4D01G223300.2 Wheat cytosol 86.37 86.48
TraesCS4A01G081100.1 Wheat cytosol 86.13 86.24
TraesCS4B01G222700.3 Wheat cytosol 86.5 85.97
GSMUA_Achr5P18710_001 Banana cytosol, extracellular 80.05 81.44
VIT_03s0038g00290.t01 Wine grape cytosol 77.01 77.01
Bra010712.1-P Field mustard cytosol 76.52 76.8
AT4G39080.1 Thale cress cytosol, nucleus, plasma membrane 76.4 76.49
HORVU4Hr1G062880.3 Barley plasma membrane, vacuole 85.77 76.05
VIT_18s0001g13410.t01 Wine grape cytosol 74.57 75.87
Solyc01g110120.2.1 Tomato nucleus, plastid 75.67 75.85
Bra011878.1-P Field mustard cytosol 68.86 75.67
AT2G21410.1 Thale cress cytosol 75.43 75.52
Bra031187.1-P Field mustard cytosol 75.43 75.52
KRH24405 Soybean endoplasmic reticulum 75.06 75.43
PGSC0003DMT400071849 Potato cytosol 74.82 75.18
Solyc07g032080.2.1 Tomato plastid 74.57 74.94
Bra030300.1-P Field mustard cytosol 74.45 74.82
KRH29384 Soybean endoplasmic reticulum 74.45 74.82
KRG89695 Soybean extracellular, mitochondrion 5.84 73.85
KRH51766 Soybean endoplasmic reticulum 72.38 73.01
KRH61086 Soybean cytosol, mitochondrion 58.52 70.63
CDX80454 Canola extracellular 5.6 64.79
EES03840 Sorghum cytosol 62.77 63.08
KXG29301 Sorghum cytosol 2.68 51.16
CDX89488 Canola cytosol 7.18 44.03
Protein Annotations
MapMan:24.1.1.1.1EntrezGene:8054336UniProt:C5WQW9ncoils:CoilEnsemblPlants:EER95168ProteinID:EER95168
ProteinID:EER95168.1GO:GO:0000220GO:GO:0000325GO:GO:0003674GO:GO:0003824GO:GO:0005215
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005773GO:GO:0006139GO:GO:0006810GO:GO:0006811GO:GO:0007035GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0015078GO:GO:0015986GO:GO:0015991
GO:GO:0015992GO:GO:0016020GO:GO:0016021GO:GO:0016043GO:GO:0016471GO:GO:0016787
GO:GO:0019725GO:GO:0033179GO:GO:0046961GO:GO:0051117GO:GO:0070072PFAM:PF01496
PIRSF:PIRSF001293PANTHER:PTHR11629PANTHER:PTHR11629:SF89EnsemblPlantsGene:SORBI_3001G435400unigene:Sbi.4360TMHMM:TMhelix
UniParc:UPI0001A83232InterPro:V-ATPase_116kDa_suInterPro:V-type_ATPase_116kDa_su_eukaRefSeq:XP_002468170.1SEG:seg:
Description
hypothetical protein
Coordinates
chr1:-:71379214..71386213
Molecular Weight (calculated)
92824.2 Da
IEP (calculated)
5.972
GRAVY (calculated)
-0.009
Length
822 amino acids
Sequence
(BLAST)
001: MARGGGGGCC PQMDLMRSEA MQLVQVIIPA ESAHLTVSYL GDLGLLQFKD LNAEKSPFQR TYAAQIKRCS EMARKLRFFK EQMSKADITT SPTQLNETHL
101: DFDDLEIKLG ELEAELTEVN ANNEKLQRTY NELLEYHTVL QKAGDFFYSA QRTAAAQQRE MEANQSGQTS LESPLLEQEM SNDPSKQVKL GSLSGLVPKE
201: KAMAFERILF RATRGNIFLR QEPVDEPVTD PVSGEKVTKN AFVIFYSGER AKTKILKICD AFNANRYPFP EDVSKQLHAV QEVSGKISEL KATIDMGLAH
301: RDSILKNIAS DFEQWNHLAK KEKAIYHTLN MLSVDVTKKC LVAEGWSPVF ASVQIQDALQ RATVDSKSQV GSIFQVLNTK ESPPTYFQTN KFTTAFQEIV
401: DAYGVAKYQE ANPGVFTIVT FPFLFAVMFG DWGHGICLLL ATLYLIIREK KLASQKLGDI MEMMFGGRYV IMMMAVFSIY TGLIYNEFFS VPFELFGKSA
501: YECRDPSCSD ATTDGLIKVR DAYPFGVDPV WHGSRSELPF LNSLKMKMSI LLGVAQMNLG IVISYFNAKF FRNSLNVWYQ FIPQLIFLNS LFGYLSLLII
601: IKWCTGSKAD LYHVMIYMFL SPTDELGENQ LFSGQKTVQL VLLLLALVSV PWMLIPKPLL LKKQHQQRHQ GHQYAMLQGT DESVGAELGE HHEDAHDHEE
701: FEFSEVFVHQ LIHTIEFVLG AVSNTASYLR LWALSLAHSE LSTVFYDKVL LTALGLNNIF ALIIGGIVFV FATVGVLLVM ETLSAFLHAL RLHWVEFQNK
801: FYEGDGYKFA PFSFALIREE ED
Best Arabidopsis Sequence Match ( AT4G39080.1 )
(BLAST)
001: MAESGGGGGC CPPMDLMRSE TMQLVQLIVP MESAHLTVSY LGDLGLVQFK DLNSEKSPFQ RTYAAQIKRC GEMARKIRFF RDQMSKAGVP AKEMQGKEND
101: IDLDDVEVKL GELEAELVEI NANNDKLQRS YNELMEYKLV LQKAGEFFSS AHRSAADQQR ETESQQAGED LLESPLLQEE KSIDSTKQVK LGFLTGLVPR
201: EKSMVFERIL FRATRGNIFI RQTVIEEPVI DPNSGEKAEK NVFVVFYSGE RAKSKILKIC EAFGANRYPF SEDLGRQAQM ITEVSGRLSE LKTTIDAGLG
301: QRNILLQTIG DKFELWNLKV RKEKAIYHTL NMLSLDVTKK CLVAEGWSPV FASREIQDAL QRAAVDSNSQ VGSIFQVLRT KESPPTYFRT NKFTSAIQEI
401: VDAYGVAKYQ EANPGVFTIV TFPFLFAVMF GDWGHGICIL LATMYLILKE KKLASQKLGD IMEMAFGGRY VILMMSLFSI YTGLIYNEFF SIPFPLFAPS
501: AYDCRDVSCS EATTIGLIKV RDTYPFGLDP VWHGSRSELP FLNSLKMKMS ILLGVSQMNL GIIMSYFNAR FFKSSVNIWF QFIPQMIFLN SLFGYLSVLI
601: IIKWCTGSQA DLYHVMIYMF LSPMDELGEN QLFPHQKTLQ LVLLFLALVS VPCMLLPKPF ILKKQHEARH QGQAYAPLDE TDESLHVETN GGGSHGHEEF
701: EFSEIFVHQL IHTIEFVLGA VSNTASYLRL WALSLAHSEL SSVFYEKVLL LAWGYNNPLI LIVGVLVFIF ATVGVLLVME TLSAFLHALR LHWVEFQNKF
801: YEGDGYKFAP FTFIFTANED E
Arabidopsis Description
VHA-A3V-type proton ATPase subunit a3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4S4]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.