Factsheet for VIT_03s0038g00290.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0184300-01	Rice	plasma membrane	10.58	82.86
VIT_18s0001g13410.t01	Wine grape	cytosol	80.54	81.93
KRH24405	Soybean	endoplasmic reticulum	81.02	81.42
GSMUA_Achr5P18710_001	Banana	cytosol, extracellular	79.81	81.19
KRH29384	Soybean	endoplasmic reticulum	80.66	81.05
Solyc01g110120.2.1	Tomato	nucleus, plastid	79.56	79.76
CDY41958	Canola	cytosol	78.59	79.07
CDY42603	Canola	cytosol	78.47	78.85
CDY12118	Canola	cytosol	78.59	78.78
Bra010712.1-P	Field mustard	cytosol	78.47	78.75
CDX90307	Canola	cytosol	78.47	78.75
Bra011878.1-P	Field mustard	cytosol	71.65	78.74
AT4G39080.1	Thale cress	cytosol, nucleus, plasma membrane	78.22	78.32
Bra031187.1-P	Field mustard	cytosol	77.86	77.95
AT2G21410.1	Thale cress	cytosol	77.74	77.83
Zm00001d047910_P001	Maize	plasma membrane	77.49	77.68
CDX99594	Canola	cytosol	77.74	77.64
CDX82029	Canola	cytosol	77.37	77.47
Zm00001d028436_P001	Maize	mitochondrion, plastid	77.37	77.37
Bra030300.1-P	Field mustard	cytosol	76.76	77.14
EER95168	Sorghum	cytosol	77.01	77.01
CDY15895	Canola	cytosol	76.64	76.92
Os03t0251500-01	Rice	plasma membrane	76.28	76.46
TraesCS4D01G223300.2	Wheat	cytosol	75.18	75.27
TraesCS4A01G081100.1	Wheat	cytosol	74.94	75.03
TraesCS4B01G222700.3	Wheat	cytosol	75.18	74.73
HORVU2Hr1G109990.2	Barley	vacuole	72.14	72.41
TraesCS2B01G520900.1	Wheat	cytosol	71.41	71.67
TraesCS2D01G493000.1	Wheat	cytosol	71.29	71.55
TraesCS2A01G492800.1	Wheat	cytosol	70.68	70.94
KRG89695	Soybean	extracellular, mitochondrion	5.47	69.23
CDY61341	Canola	cytosol	24.09	69.23
CDY71986	Canola	cytosol	18.37	67.71
CDY13818	Canola	cytosol, nucleus, plastid	65.82	67.71
HORVU4Hr1G062880.3	Barley	plasma membrane, vacuole	74.21	65.8
VIT_06s0004g03450.t01	Wine grape	cytosol	65.09	65.4
CDX96169	Canola	cytosol, plasma membrane, plastid	18.0	64.63
VIT_13s0175g00200.t01	Wine grape	cytosol	13.75	58.85
VIT_13s0175g00190.t01	Wine grape	extracellular	3.65	47.62

Protein Annotations

EntrezGene:100258865	wikigene:100258865	MapMan:24.1.1.1.1	ProteinID:CBI38019	ProteinID:CBI38019.3	ncoils:Coil
UniProt:D7U5K0	EMBL:FN596508	GO:GO:0000220	GO:GO:0000325	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0006139	GO:GO:0006810	GO:GO:0006811	GO:GO:0007035
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015078	GO:GO:0015986
GO:GO:0015991	GO:GO:0015992	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016471
GO:GO:0016787	GO:GO:0019725	GO:GO:0033179	GO:GO:0046961	GO:GO:0051117	GO:GO:0070072
EntrezGene:LOC100258865	wikigene:LOC100258865	PFAM:PF01496	PIRSF:PIRSF001293	PANTHER:PTHR11629	PANTHER:PTHR11629:SF89
TIGR:TC62116	TMHMM:TMhelix	UniParc:UPI00015C89A2	InterPro:V-ATPase_116kDa_su	InterPro:V-type_ATPase_116kDa_su_euka	ArrayExpress:VIT_03s0038g00290
EnsemblPlantsGene:VIT_03s0038g00290	EnsemblPlants:VIT_03s0038g00290.t01	unigene:Vvi.7987	RefSeq:XP_002265086	RefSeq:XP_002265086.1	RefSeq:XP_010647686.1
SEG:seg	:	:	:	:	:

Description

V-type proton ATPase subunit a [Source:UniProtKB/TrEMBL;Acc:D7U5K0]

Coordinates

chr3:-:261070..276238

Molecular Weight (calculated)

93030.1 Da

IEP (calculated)

6.102

GRAVY (calculated)

0.106

Length

822 amino acids

Sequence
(BLAST)

001: MGDGGGGRGG CCPPMDLFRS EPMQLVQLII PIESAHHTIS YLGDLGLIQF KDLNVEKSPF QRTYAAQIKK CAEMARKLRF FKEQMSKAGL SPSAKIMMRG
101: DIDMDDLEVK LGELEAELVE INANGEKLQR AYSELAEYKL VLHKAGEFFY SIRSSATAQQ REIEAHSISE ESVDTPLLLE QEMSTDLSKQ VKLGFLAGLV
201: PRVKSMAFER ILFRATRGNV FLRQSAVEDP VTDPVSGEKI EKNVFVVFYS GEKVKNKILK ICEAFGANRY SFPEDLGKQA QMITEVSGRL SELKTTIDVG
301: LLHRGNLLQT IGDQFEQWNL LVRKEKSIYH TLNMLSIDVT KKCLVAEGWS PTFATKQIQD ALQRATFDSN SQVGAIFQVL HTIESPPTYF RTNKFTSAFQ
401: EIVDAYGVAK YQEANPGVFT IVTFPFLFAV MFGDWGHGLC LLLATLFFII REKKLSNQKL GDITEMTFGG RYVILMMALF SIYTGLIYNE FFSVPFELFG
501: PSAYACRDLS CRDASTAGLI KVRRTYPFGV DPVWHGSRSE LPFLNSLKMK MSILIGVAQM NLGIILSYFN AKFFQNSLNI WFQFVPQMIF LNSLFGYLSV
601: LIIVKWCTGS QADLYHIMIY MFLSPTDDLG ENQLFIGQKT GQIVLLLLAL VAVPWMLLPK PFLMKKQHEE RHQSQLYVPL QSTEDSFQLD TSHDSHDHEE
701: FEFGEVFVHQ LIHTIEFVLG AVSNTASYLR LWALSLAHSE LSSVFYEKVL LLAWGFNNVI ILIVGIIVFI CATIGVLLVM ETLSAFLHAL RLHWVEFQNK
801: FYEGDGYKFC PFSFALLSEE DD

Best Arabidopsis Sequence Match ( AT4G39080.1 )
(BLAST)

001: MAESGGGGGC CPPMDLMRSE TMQLVQLIVP MESAHLTVSY LGDLGLVQFK DLNSEKSPFQ RTYAAQIKRC GEMARKIRFF RDQMSKAGVP AKEMQGKEND
101: IDLDDVEVKL GELEAELVEI NANNDKLQRS YNELMEYKLV LQKAGEFFSS AHRSAADQQR ETESQQAGED LLESPLLQEE KSIDSTKQVK LGFLTGLVPR
201: EKSMVFERIL FRATRGNIFI RQTVIEEPVI DPNSGEKAEK NVFVVFYSGE RAKSKILKIC EAFGANRYPF SEDLGRQAQM ITEVSGRLSE LKTTIDAGLG
301: QRNILLQTIG DKFELWNLKV RKEKAIYHTL NMLSLDVTKK CLVAEGWSPV FASREIQDAL QRAAVDSNSQ VGSIFQVLRT KESPPTYFRT NKFTSAIQEI
401: VDAYGVAKYQ EANPGVFTIV TFPFLFAVMF GDWGHGICIL LATMYLILKE KKLASQKLGD IMEMAFGGRY VILMMSLFSI YTGLIYNEFF SIPFPLFAPS
501: AYDCRDVSCS EATTIGLIKV RDTYPFGLDP VWHGSRSELP FLNSLKMKMS ILLGVSQMNL GIIMSYFNAR FFKSSVNIWF QFIPQMIFLN SLFGYLSVLI
601: IIKWCTGSQA DLYHVMIYMF LSPMDELGEN QLFPHQKTLQ LVLLFLALVS VPCMLLPKPF ILKKQHEARH QGQAYAPLDE TDESLHVETN GGGSHGHEEF
701: EFSEIFVHQL IHTIEFVLGA VSNTASYLRL WALSLAHSEL SSVFYEKVLL LAWGYNNPLI LIVGVLVFIF ATVGVLLVME TLSAFLHALR LHWVEFQNKF
801: YEGDGYKFAP FTFIFTANED E

Arabidopsis Description

VHA-A3V-type proton ATPase subunit a3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4S4]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.