CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 3
plasma membrane 2
nucleus 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29384	Soybean	endoplasmic reticulum	98.41	98.41
VIT_03s0038g00290.t01	Wine grape	cytosol	81.42	81.02
Os10t0184300-01	Rice	plasma membrane	10.27	80.0
CDY42603	Canola	cytosol	78.97	78.97
CDY41958	Canola	cytosol	78.73	78.83
Bra010712.1-P	Field mustard	cytosol	78.85	78.75
CDX90307	Canola	cytosol	78.85	78.75
CDY12118	Canola	cytosol	78.85	78.66
Solyc01g110120.2.1	Tomato	nucleus, plastid	78.36	78.17
Bra011878.1-P	Field mustard	cytosol	71.27	77.94
AT4G39080.1	Thale cress	cytosol, nucleus, plasma membrane	77.87	77.59
CDY15895	Canola	cytosol	77.63	77.53
CDX99594	Canola	cytosol	78.0	77.52
Bra030300.1-P	Field mustard	cytosol	77.38	77.38
CDX82029	Canola	cytosol	77.26	76.98
Bra031187.1-P	Field mustard	cytosol	77.14	76.86
GSMUA_Achr5P18710_001	Banana	cytosol, extracellular	75.79	76.73
AT2G21410.1	Thale cress	cytosol	76.65	76.37
Zm00001d047910_P001	Maize	plasma membrane	75.67	75.49
EER95168	Sorghum	cytosol	75.43	75.06
Zm00001d028436_P001	Maize	mitochondrion, plastid	75.31	74.94
KRH51766	Soybean	endoplasmic reticulum	73.72	73.99
Os03t0251500-01	Rice	plasma membrane	74.08	73.9
TraesCS4D01G223300.2	Wheat	cytosol	73.84	73.57
TraesCS4B01G222700.3	Wheat	cytosol	74.08	73.28
TraesCS4A01G081100.1	Wheat	cytosol	73.47	73.2
KRG89695	Soybean	extracellular, mitochondrion	5.75	72.31
HORVU2Hr1G109990.2	Barley	vacuole	71.03	70.94
TraesCS2B01G520900.1	Wheat	cytosol	71.03	70.94
TraesCS2D01G493000.1	Wheat	cytosol	70.9	70.82
KRH61086	Soybean	cytosol, mitochondrion	58.68	70.48
TraesCS2A01G492800.1	Wheat	cytosol	70.42	70.33
CDY61341	Canola	cytosol	23.59	67.48
CDY13818	Canola	cytosol, nucleus, plastid	64.79	66.33
CDY71986	Canola	cytosol	17.97	65.92
HORVU4Hr1G062880.3	Barley	plasma membrane, vacuole	73.23	64.62
KRH22944	Soybean	cytosol	64.18	64.02
KRH24948	Soybean	cytosol	63.57	63.57
CDX96169	Canola	cytosol, plasma membrane, plastid	17.73	63.32
KRH10401	Soybean	cytosol, endoplasmic reticulum	63.33	63.02
KRG89062	Soybean	cytosol, endoplasmic reticulum	62.96	62.96

Protein Annotations

EntrezGene:100810062	MapMan:24.1.1.1.1	EMBL:ACUP02007175	ProteinID:BAX25280.1	ncoils:Coil	EnsemblPlantsGene:GLYMA_12G039300
GO:GO:0000220	GO:GO:0000325	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0006139	GO:GO:0006810	GO:GO:0006811	GO:GO:0007035	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015078	GO:GO:0015986	GO:GO:0015991	GO:GO:0015992
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016471	GO:GO:0016787	GO:GO:0019725
GO:GO:0033179	GO:GO:0046961	GO:GO:0051117	GO:GO:0070072	UniProt:I1LPZ3	EnsemblPlants:KRH24405
ProteinID:KRH24405	ProteinID:KRH24405.1	PFAM:PF01496	PIRSF:PIRSF001293	PANTHER:PTHR11629	PANTHER:PTHR11629:SF89
TMHMM:TMhelix	UniParc:UPI000233CED0	InterPro:V-ATPase_116kDa_su	InterPro:V-type_ATPase_116kDa_su_euka	SEG:seg	:

Description

hypothetical protein

Coordinates

chr12:+:2846198..2857150

Molecular Weight (calculated)

92931.5 Da

IEP (calculated)

5.822

GRAVY (calculated)

0.053

Length

818 amino acids

Sequence
(BLAST)

001: MGEVARGGCC PPMDLFRSEP MQLVQLIIPI ESAHRTVSYL GDLGLLQFKD LNADKSPFQR TYAAQIKRCG EMARGLRFFK DQMLKAGVSP KYSTTPVDLN
101: IDDLEVKLTE IESELTEMNA NGEKLQRSYN ELVEYKLVLQ KAGEFFHSAQ SRALEQQREQ ESCHLSGESM ETPLLQDQEL SIDSSKQVKL GFLAGLVPRE
201: KSMVFERILF RATRGNVFLR QATVEDPVTD PVSGEKTEKN VFVVFYAGEK AKAKILKICE AFGANRYPFA EELGKQAQMI TEVSGRLLEL KTTIDAGLLH
301: RDNLLNTIGA QFEQWDALVR KEKSIHHTLN MLSLDVTKKC LVAEGWSPVF ATKQIQDALQ RAALDSNSQV NAIFQVLQTR ELPPTYFRTN KFTSSFQGII
401: DSYGVAKYQE ANPTVYTVVT FPFLFAVMFG DWGHGICLLL AALYFIIREK KLSSQKLDDI TEMTFGGRYV ILLMAIFSIY TGFIYNEFFS VPFAIFAPSA
501: YECRDLSCRD ATTVGLIKVR DTYPFGVDPV WHGTRSELPF LNSLKMKMSI LLGVAQMNLG IVMSYFNAIF FRNSVNVWFQ FIPQMIFLNS LFGYLSLLII
601: VKWATGSQAD LYHILIYMFL SPTDDLGENQ LFAGQKNLQL VLLLLAVISV PWMLLPKPFI LKKQHEARHG VESYEPLQST DESLQVESNH DSHGHEEFEF
701: SEVFVHQLIH TIEFVLGAVS NTASYLRLWA LSLAHSELSS VFYEKVLMMA WGYNNVIILI VGLIVFIFAT VGVLLVMETL SAFLHALRLH WVEFQNKFYE
801: GDGYKFHPFS FSWLDDEE

Best Arabidopsis Sequence Match ( AT4G39080.1 )
(BLAST)

001: MAESGGGGGC CPPMDLMRSE TMQLVQLIVP MESAHLTVSY LGDLGLVQFK DLNSEKSPFQ RTYAAQIKRC GEMARKIRFF RDQMSKAGVP AKEMQGKEND
101: IDLDDVEVKL GELEAELVEI NANNDKLQRS YNELMEYKLV LQKAGEFFSS AHRSAADQQR ETESQQAGED LLESPLLQEE KSIDSTKQVK LGFLTGLVPR
201: EKSMVFERIL FRATRGNIFI RQTVIEEPVI DPNSGEKAEK NVFVVFYSGE RAKSKILKIC EAFGANRYPF SEDLGRQAQM ITEVSGRLSE LKTTIDAGLG
301: QRNILLQTIG DKFELWNLKV RKEKAIYHTL NMLSLDVTKK CLVAEGWSPV FASREIQDAL QRAAVDSNSQ VGSIFQVLRT KESPPTYFRT NKFTSAIQEI
401: VDAYGVAKYQ EANPGVFTIV TFPFLFAVMF GDWGHGICIL LATMYLILKE KKLASQKLGD IMEMAFGGRY VILMMSLFSI YTGLIYNEFF SIPFPLFAPS
501: AYDCRDVSCS EATTIGLIKV RDTYPFGLDP VWHGSRSELP FLNSLKMKMS ILLGVSQMNL GIIMSYFNAR FFKSSVNIWF QFIPQMIFLN SLFGYLSVLI
601: IIKWCTGSQA DLYHVMIYMF LSPMDELGEN QLFPHQKTLQ LVLLFLALVS VPCMLLPKPF ILKKQHEARH QGQAYAPLDE TDESLHVETN GGGSHGHEEF
701: EFSEIFVHQL IHTIEFVLGA VSNTASYLRL WALSLAHSEL SSVFYEKVLL LAWGYNNPLI LIVGVLVFIF ATVGVLLVME TLSAFLHALR LHWVEFQNKF
801: YEGDGYKFAP FTFIFTANED E

Arabidopsis Description

VHA-A3V-type proton ATPase subunit a3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4S4]
SUBAcon: [cytosol,nucleus,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.