CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

cytosol 4
plasma membrane 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24948	Soybean	cytosol	96.45	96.45
KRH22944	Soybean	cytosol	87.78	87.56
KRH10401	Soybean	cytosol, endoplasmic reticulum	87.9	87.47
VIT_06s0004g03450.t01	Wine grape	cytosol	83.99	83.99
PGSC0003DMT400065278	Potato	cytosol	82.27	82.17
Solyc11g072530.1.1	Tomato	cytosol	82.15	82.05
PGSC0003DMT400019381	Potato	cytosol	81.42	81.42
Solyc06g075400.2.1	Tomato	cytosol	81.17	81.17
AT2G28520.1	Thale cress	cytosol	79.34	79.44
CDY15756	Canola	cytosol	77.38	79.22
CDY04571	Canola	cytosol	76.77	79.09
CDY53381	Canola	cytosol	76.53	78.35
CDX77187	Canola	cytosol	76.04	78.34
CDX83292	Canola	cytosol	78.48	78.01
Bra011941.1-P	Field mustard	cytosol	77.75	77.47
Bra035693.1-P	Field mustard	cytosol	77.02	76.83
GSMUA_Achr7P22660_001	Banana	cytosol	75.31	76.14
CDY63878	Canola	cytosol, plasma membrane, plastid	78.48	75.53
Zm00001d042969_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	21.52	74.89
EES03840	Sorghum	cytosol	73.96	73.96
Zm00001d012446_P002	Maize	cytosol	73.47	73.47
Os01t0834200-01	Rice	cytosol	72.74	72.74
TraesCS3B01G385500.1	Wheat	cytosol	71.64	71.73
TraesCS3D01G346900.1	Wheat	golgi, unclear	71.52	71.6
TraesCS3A01G352800.1	Wheat	cytosol	71.27	71.36
CDX83291	Canola	cytosol	15.4	69.23
Bra000490.1-P	Field mustard	cytosol	76.16	65.24
KRG89695	Soybean	extracellular, mitochondrion	5.13	64.62
VIT_13s0175g00200.t01	Wine grape	cytosol	14.91	63.54
KRH51766	Soybean	endoplasmic reticulum	63.08	63.31
KRH29384	Soybean	endoplasmic reticulum	63.08	63.08
KRH24405	Soybean	endoplasmic reticulum	62.96	62.96
KXG29301	Sorghum	cytosol	3.18	60.47
KRH61086	Soybean	cytosol, mitochondrion	49.76	59.77
Zm00001d046282_P001	Maize	cytosol	10.27	57.93
Zm00001d040680_P001	Maize	mitochondrion	7.95	57.02

Protein Annotations

EntrezGene:100786845	MapMan:24.1.1.1.1	ncoils:Coil	EnsemblPlantsGene:GLYMA_U021500	GO:GO:0000220	GO:GO:0000325
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006139	GO:GO:0006810
GO:GO:0006811	GO:GO:0007035	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015078	GO:GO:0015986	GO:GO:0015991	GO:GO:0015992	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016471	GO:GO:0016787	GO:GO:0019725	GO:GO:0033179	GO:GO:0046961
GO:GO:0051117	GO:GO:0070072	UniProt:I1LKB7	EnsemblPlants:KRG89062	ProteinID:KRG89062	ProteinID:KRG89062.1
PFAM:PF01496	PIRSF:PIRSF001293	PANTHER:PTHR11629	PANTHER:PTHR11629:SF72	TMHMM:TMhelix	UniParc:UPI000233D571
InterPro:V-ATPase_116kDa_su	InterPro:V-type_ATPase_116kDa_su_euka	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chrscaffold_21:+:3472187..3483228

Molecular Weight (calculated)

93769.9 Da

IEP (calculated)

6.185

GRAVY (calculated)

0.080

Length

818 amino acids

Sequence
(BLAST)

001: MVRFIENLPP MDLMRSEAMT FVQLIIPAES AHRAITYLGE LGLLQFRDLN AEKSPFQRTF VNQVKRCAEM SRKLRFFKDQ INKAGLMSSP SVLQSDIYLE
101: DLEIQLAEHE HELIEMNSNS EKLQQSYNEL LEFKIVLQKA CRFLVSSRGN ACSEETELEE NVFSNGDYIE TPFLFEQEMR PAPSNQSGLR FISGMICKSK
201: VLRFERMLFR ATRGNMLFNH APADEQIMDP ISTEMVEKIV FVVFFSGEQA RTKILKICDA FGANCYPVPE DTNKQRQITS EVSSRLADLE ATLDAGIRLR
301: NKALASVGGH LTKWMDMVRR EKAVYDTLNM LNFDVTKKCL VGEGWCPIFA KTQIQEALER ATFDSSSQVG IIFHSMDALE SPPTYFRTNS FTSPYQEIVD
401: AYGVARYQEA NPAVYTTIIF PFLFAVMFGD WGHGICLLLG ALVLIARQSK LSTQRLGSFM EMLFGGRYVL LLMSLFSIYC GLIYNEFFSV PYHIFGASAY
501: KCQDSSCRDA HTIGLVKYRE PYPFGVDPSW RGSRSELPFL NSLKMKMSIL LGVVHMNLGI LLSYFNARFF GNSLDIRYQF VPQIIFLNCL FGYLSLLIVV
601: KWCTGSQADL YHVMIYMFLS PFDNLGENQL FWGQRPLQVV LLLLAVIAVP WMLFPKPFIL KKLYNERFQG RTYGVLNTSE VDLELEPDSA RQYHEEFNFS
701: EVFVHQMIHS IEFVLGSVSN TASYLRLWAL SLAHSELSTV FYEKVLLLAW GYDNLVIRLV GLAVFAFATA FILLMMETLS AFLHALRLHW VEFQNKFYSG
801: DGYKFKPFSF VSLTEEEN

Best Arabidopsis Sequence Match ( AT2G28520.1 )
(BLAST)

001: MEEFLDKLPQ MDLMRSEKMT LVQLIIPVES AHRSITYLGE LGLLQFRDLN ADKSPFQRTF ANQVKRCGEM SRKLRFFKDQ IDKAGLRCSP RLEIEPDIAL
101: GDLERQLADH EHEVLEMNSN SEKLRQTYNE LLEFKIVLEK ASGFLVSSNT HAIGEEIELH ESTYSNNGFI ETASLLEQEM NPGHSNQSGL RFISGIINKD
201: KLLKFERMLF RATRGNMLFN QTTSDEEIMD PSTSEMVEKV VFVVFFSGEQ ARTKILKICE AFGANCYPVP EDTTKQRQLT REVLSRLSDL EATLDAGTRH
301: RNNALNSVGY SLTNWITTVR REKAVYDTLN MLNFDVTKKC LVGEGWCPTF AKTQIHEVLQ RATFDSSSQV GVIFHVMQAV ESPPTYFRTN KLTNAFQEII
401: DAYGVARYQE ANPAVYSVVT YPFLFAVMFG DWGHGLCLLL GALYLLARER KLSTQKLGSF MEMLFGGRYV ILLMALFSIY CGLIYNEFFS VPFHIFGGSA
501: YKCRDTTCSD AYTVGLIKYR DPYPFGVDPS WRGSRTELPY LNSLKMKMSI LLGIAQMNLG LILSFFNARF FGSSLDIRYQ FIPQMIFLNS LFGYLSLLII
601: IKWCTGSQAD LYHVMIYMFL SPTEELGENE LFWGQRPLQI VLLLLAFIAV PWMLFPKPFA LRKIHMERFQ GRTYGVLVSS EVDLDVEPDS ARGGGHHEEE
701: FNFSEIFVHQ LIHSIEFVLG SVSNTASYLR LWALSLAHSE LSTVFYEKVL LLAWGYENIL IRLIGVAVFA FATAFILLMM ETLSAFLHAL RLHWVEFMGK
801: FFNGDGYKFK PFSFALI

Arabidopsis Description

VHA-A1V-type proton ATPase subunit a1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.