Factsheet for PGSC0003DMT400065278

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plasma membrane 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g072530.1.1	Tomato	cytosol	99.15	99.15
PGSC0003DMT400019381	Potato	cytosol	89.62	89.73
VIT_06s0004g03450.t01	Wine grape	cytosol	85.96	86.06
KRH22944	Soybean	cytosol	83.27	83.17
KRH10401	Soybean	cytosol, endoplasmic reticulum	82.78	82.48
KRG89062	Soybean	cytosol, endoplasmic reticulum	82.17	82.27
KRH24948	Soybean	cytosol	82.17	82.27
CDY15756	Canola	cytosol	77.53	79.47
CDY04571	Canola	cytosol	76.92	79.35
AT2G28520.1	Thale cress	cytosol	79.0	79.19
CDY53381	Canola	cytosol	77.17	79.1
Zm00001d042969_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	22.59	78.72
CDX83292	Canola	cytosol	78.88	78.49
CDX77187	Canola	cytosol	76.07	78.46
Bra011941.1-P	Field mustard	cytosol	77.78	77.59
Bra035693.1-P	Field mustard	cytosol	77.17	77.07
GSMUA_Achr7P22660_001	Banana	cytosol	75.58	76.51
CDY63878	Canola	cytosol, plasma membrane, plastid	79.0	76.12
EES03840	Sorghum	cytosol	74.97	75.06
Zm00001d012446_P002	Maize	cytosol	74.48	74.57
Os01t0834200-01	Rice	cytosol	73.63	73.72
TraesCS3B01G385500.1	Wheat	cytosol	73.02	73.19
TraesCS3D01G346900.1	Wheat	golgi, unclear	73.02	73.19
TraesCS3A01G352800.1	Wheat	cytosol	72.65	72.83
CDX83291	Canola	cytosol	15.38	69.23
Bra000490.1-P	Field mustard	cytosol	76.56	65.65
PGSC0003DMT400071849	Potato	cytosol	63.98	64.06
KXG29301	Sorghum	cytosol	3.3	62.79
VIT_13s0175g00200.t01	Wine grape	cytosol	14.53	61.98
Zm00001d046282_P001	Maize	cytosol	10.5	59.31
Zm00001d040680_P001	Maize	mitochondrion	7.81	56.14

Protein Annotations

EntrezGene:102602933	MapMan:24.1.1.1.1	ncoils:Coil	GO:GO:0000220	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006810
GO:GO:0006811	GO:GO:0008150	GO:GO:0015078	GO:GO:0015991	GO:GO:0015992	GO:GO:0016020
GO:GO:0016021	GO:GO:0033179	UniProt:M1CDP8	PFAM:PF01496	EnsemblPlantsGene:PGSC0003DMG400025375	PGSC:PGSC0003DMG400025375
EnsemblPlants:PGSC0003DMT400065278	PIRSF:PIRSF001293	PANTHER:PTHR11629	PANTHER:PTHR11629:SF72	TMHMM:TMhelix	UniParc:UPI0002957C1C
InterPro:V-ATPase_116kDa_su	InterPro:V-type_ATPase_116kDa_su_euka	RefSeq:XP_006366398.1	SEG:seg	:	:

Description

Vacuolar proton atpase [Source:PGSC_GENE;Acc:PGSC0003DMG400025375]

Coordinates

chr11:+:44350572..44363586

Molecular Weight (calculated)

93696.7 Da

IEP (calculated)

5.896

GRAVY (calculated)

0.065

Length

819 amino acids

Sequence
(BLAST)

001: MEYIDNLPPM DLMRSEKMTF VQLIIPVESA HPAITYLGQL GLLQFRDLNA DKSPFQRTFV NQVKRCAEMS RKLRFFKDQI QKAGMLPSPR PASQPDIELE
101: ELEIQLAEHE HELIEMNGNS EKLRQSYNEL LEFKMVLQKA SDFLISSRSH TTAQETELSE NVYSNDNYTD TASLLEQEMQ PELSNQSGVR FISGIICKCK
201: VLQFERMLFR ATRGNMLFHQ GVADEEILDP SSNEMVEKIV FVVFFSGEQA RSKILKICEA FGANCYPVPE DMTKRRQITR EVLSRLSELE TTLDVGLRHR
301: DKALTSIGFH LTKWMNMVRR EKAVYDTLNM LNFDVTKKCL VGEGWCPIFA KIKIQEALQR ATMDSNSQVG IIFHVMDAVD SPPTYFRTNC FTNAYQEIVD
401: AYGVAKYQEV NPAVYTIVTF PFLFAVMFGD WGHGICLLLG ALVLISKESK LSSQKLGSFM EMLFGGRYVL LLMSIFSIYC GLIYNEFFSV PFHIFGGSAY
501: KCRDASCSDA QTVGLIKYSD PYPFGVDPSW RGSRSELPFL NSLKMKMSIL LGVVQMNLGI ILSYFNARFF NSSLDIKYQF VPQVIFLNSL FGYLSLLVVV
601: KWCTGSQADL YHVMIYMFLS PFEPLGENQL FWGQSVLQVI LLLLALVAVP WMLFPKPFIL KRLHTERFQG GTYGLLGTSE VDIYEEPDSA RQHHHEEFNF
701: SEVFVHQMIH SIEFVLGAVS NTASYLRLWA LSLAHSELST VFYEKVLLLA WGYDSLVIRL IGLSVFAFAT TFILLMMETL SAFLHALRLH WVEFQNKFYH
801: GDGYKFNPFS FASLADDDD

Best Arabidopsis Sequence Match ( AT2G28520.1 )
(BLAST)

001: MEEFLDKLPQ MDLMRSEKMT LVQLIIPVES AHRSITYLGE LGLLQFRDLN ADKSPFQRTF ANQVKRCGEM SRKLRFFKDQ IDKAGLRCSP RLEIEPDIAL
101: GDLERQLADH EHEVLEMNSN SEKLRQTYNE LLEFKIVLEK ASGFLVSSNT HAIGEEIELH ESTYSNNGFI ETASLLEQEM NPGHSNQSGL RFISGIINKD
201: KLLKFERMLF RATRGNMLFN QTTSDEEIMD PSTSEMVEKV VFVVFFSGEQ ARTKILKICE AFGANCYPVP EDTTKQRQLT REVLSRLSDL EATLDAGTRH
301: RNNALNSVGY SLTNWITTVR REKAVYDTLN MLNFDVTKKC LVGEGWCPTF AKTQIHEVLQ RATFDSSSQV GVIFHVMQAV ESPPTYFRTN KLTNAFQEII
401: DAYGVARYQE ANPAVYSVVT YPFLFAVMFG DWGHGLCLLL GALYLLARER KLSTQKLGSF MEMLFGGRYV ILLMALFSIY CGLIYNEFFS VPFHIFGGSA
501: YKCRDTTCSD AYTVGLIKYR DPYPFGVDPS WRGSRTELPY LNSLKMKMSI LLGIAQMNLG LILSFFNARF FGSSLDIRYQ FIPQMIFLNS LFGYLSLLII
601: IKWCTGSQAD LYHVMIYMFL SPTEELGENE LFWGQRPLQI VLLLLAFIAV PWMLFPKPFA LRKIHMERFQ GRTYGVLVSS EVDLDVEPDS ARGGGHHEEE
701: FNFSEIFVHQ LIHSIEFVLG SVSNTASYLR LWALSLAHSE LSTVFYEKVL LLAWGYENIL IRLIGVAVFA FATAFILLMM ETLSAFLHAL RLHWVEFMGK
801: FFNGDGYKFK PFSFALI

Arabidopsis Description

VHA-A1V-type proton ATPase subunit a1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.