CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, plasma membrane, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83292	Canola	cytosol	96.47	99.64
CDX83291	Canola	cytosol	21.06	98.35
CDY53381	Canola	cytosol	90.94	96.75
CDX77187	Canola	cytosol	90.0	96.35
CDY15756	Canola	cytosol	90.12	95.87
CDY04571	Canola	cytosol	89.53	95.84
AT2G28520.1	Thale cress	cytosol	90.35	94.0
Bra000490.1-P	Field mustard	cytosol	92.71	82.51
VIT_06s0004g03450.t01	Wine grape	cytosol	78.59	81.66
KRH22944	Soybean	cytosol	77.29	80.12
KRH10401	Soybean	cytosol, endoplasmic reticulum	76.94	79.56
PGSC0003DMT400065278	Potato	cytosol	76.12	79.0
Solyc06g075400.2.1	Tomato	cytosol	76.0	78.97
PGSC0003DMT400019381	Potato	cytosol	76.0	78.97
KRH24948	Soybean	cytosol	75.76	78.73
Solyc11g072530.1.1	Tomato	cytosol	75.76	78.63
KRG89062	Soybean	cytosol, endoplasmic reticulum	75.53	78.48
GSMUA_Achr7P22660_001	Banana	cytosol	72.82	76.51
Zm00001d042969_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	20.59	74.47
EES03840	Sorghum	cytosol	70.24	72.98
Zm00001d012446_P002	Maize	cytosol	69.65	72.37
Os01t0834200-01	Rice	cytosol	68.94	71.64
TraesCS3B01G385500.1	Wheat	cytosol	68.82	71.6
TraesCS3D01G346900.1	Wheat	golgi, unclear	68.71	71.48
TraesCS3A01G352800.1	Wheat	cytosol	68.24	70.99
CDY42603	Canola	cytosol	59.88	62.22
CDY41958	Canola	cytosol	59.76	62.18
CDX90307	Canola	cytosol	59.76	62.03
CDY12118	Canola	cytosol	59.53	61.71
VIT_13s0175g00200.t01	Wine grape	cytosol	13.88	61.46
CDX99594	Canola	cytosol	59.29	61.24
CDY15895	Canola	cytosol	58.94	61.17
CDX82029	Canola	cytosol	58.59	60.66
KXG29301	Sorghum	cytosol	2.94	58.14
Zm00001d046282_P001	Maize	cytosol	9.65	56.55
CDY61341	Canola	cytosol	18.94	56.29
Zm00001d040680_P001	Maize	mitochondrion	7.18	53.51
CDY71986	Canola	cytosol	14.0	53.36
CDY13818	Canola	cytosol, nucleus, plastid	48.94	52.07
CDX96169	Canola	cytosol, plasma membrane, plastid	14.0	51.97
CDX80454	Canola	extracellular	4.12	49.3
CDX89488	Canola	cytosol	5.18	32.84

Protein Annotations

MapMan:24.1.1.1.1	GO:A0A078JEX2	UniProt:A0A078JEX2	EnsemblPlants:CDY63878	ProteinID:CDY63878	ProteinID:CDY63878.1
ncoils:Coil	GO:GO:0000220	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150
GO:GO:0015078	GO:GO:0015991	GO:GO:0015992	GO:GO:0016020	GO:GO:0016021	GO:GO:0033179
EnsemblPlantsGene:GSBRNA2T00039701001	PFAM:PF01496	PIRSF:PIRSF001293	PANTHER:PTHR11629	PANTHER:PTHR11629:SF72	TMHMM:TMhelix
UniParc:UPI0004EE7F20	InterPro:V-ATPase_116kDa_su	InterPro:V-type_ATPase_116kDa_su_euka	SEG:seg	:	:

Description

BnaCnng42810DV-type proton ATPase subunit a [Source:UniProtKB/TrEMBL;Acc:A0A078JEX2]

Coordinates

chrLK034362:-:25833..31404

Molecular Weight (calculated)

97437.3 Da

IEP (calculated)

6.709

GRAVY (calculated)

0.032

Length

850 amino acids

Sequence
(BLAST)

001: MDDFLDKLPQ MDLMRSEKMT LVQLIIPVES AHRSVTYLGE LGLLQFRDLN ADKSPFQRTF ATQVKRCGEM SRKLRFFKDQ IDKAGLRCLQ RHELEPNIEL
101: GDLERQLADH EHEVLEMNSN SEKLRQTYNE LLEFKIVLQK ASGFLVSSNA HAIGDETELH ESTYSNNGFI ESSSLLEQEM RPEPLNQSGL RFISGIINKD
201: KLLRFERMLF RATRGNMLFN QTPSDEEIMD PSTSEMVEKN VFVVFFSGEQ ARTKILKICE AFGANCYPVP EDITKQRQLT REVLSRLSDL EATLDAGSRH
301: RNNALNAVGY SLTKWMTTVR REKAVYDTLN MLNFDVTKKC LVGEGWCPTF AKTQIHEVLQ RATSDSNSQV GVIFHVMHAV ESPPTYFRTN KLTNAFQEII
401: DAYGVARYQE ANPAVYSVVT YPFLFAVMFG DWGHGLCLLL GALYLLARER KLSKQKLGSF MEMLFGGRYV ILLMALFSIY CGLIYNEFFS VPFHIFGGSA
501: YKCRDTTCSD AYTAGLVKYR DPYPFGVDPS WRGSRSELPY LNSLKMKMSI LLGIAQMNLG LILSFFNARF FGSSLDIRYQ FIPQMIFLNS LFGYLSLLII
601: IKWCTGSQAD LYHVMIYMFL SPTEELGENE LFWGQPFAPS LLILLLLLAF IAVPWMLFPK PFALRKIHME RFQGRTYGLL GTSEVDLDVE PDSARSHQEE
701: EFNFSEIFVH QLIHSIEFVL GSVSNTASYL RLWALSLAHS ELSTVFYEKV LLLAWGYENI LIRLIGVVVF AFATAFILLM METLSAFLHA LRLHWVEFMG
801: KFFHGDGYKF KPFSFTLISD DADALGVRRN LRRNSVCFLV VMVTYRSFLL

Best Arabidopsis Sequence Match ( AT2G28520.1 )
(BLAST)

001: MEEFLDKLPQ MDLMRSEKMT LVQLIIPVES AHRSITYLGE LGLLQFRDLN ADKSPFQRTF ANQVKRCGEM SRKLRFFKDQ IDKAGLRCSP RLEIEPDIAL
101: GDLERQLADH EHEVLEMNSN SEKLRQTYNE LLEFKIVLEK ASGFLVSSNT HAIGEEIELH ESTYSNNGFI ETASLLEQEM NPGHSNQSGL RFISGIINKD
201: KLLKFERMLF RATRGNMLFN QTTSDEEIMD PSTSEMVEKV VFVVFFSGEQ ARTKILKICE AFGANCYPVP EDTTKQRQLT REVLSRLSDL EATLDAGTRH
301: RNNALNSVGY SLTNWITTVR REKAVYDTLN MLNFDVTKKC LVGEGWCPTF AKTQIHEVLQ RATFDSSSQV GVIFHVMQAV ESPPTYFRTN KLTNAFQEII
401: DAYGVARYQE ANPAVYSVVT YPFLFAVMFG DWGHGLCLLL GALYLLARER KLSTQKLGSF MEMLFGGRYV ILLMALFSIY CGLIYNEFFS VPFHIFGGSA
501: YKCRDTTCSD AYTVGLIKYR DPYPFGVDPS WRGSRTELPY LNSLKMKMSI LLGIAQMNLG LILSFFNARF FGSSLDIRYQ FIPQMIFLNS LFGYLSLLII
601: IKWCTGSQAD LYHVMIYMFL SPTEELGENE LFWGQRPLQI VLLLLAFIAV PWMLFPKPFA LRKIHMERFQ GRTYGVLVSS EVDLDVEPDS ARGGGHHEEE
701: FNFSEIFVHQ LIHSIEFVLG SVSNTASYLR LWALSLAHSE LSTVFYEKVL LLAWGYENIL IRLIGVAVFA FATAFILLMM ETLSAFLHAL RLHWVEFMGK
801: FFNGDGYKFK PFSFALI

Arabidopsis Description

VHA-A1V-type proton ATPase subunit a1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.