Factsheet for PGSC0003DMT400019381

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g075400.2.1	Tomato	cytosol	97.92	97.92
PGSC0003DMT400065278	Potato	cytosol	89.73	89.62
VIT_06s0004g03450.t01	Wine grape	cytosol	85.09	85.09
KRG89062	Soybean	cytosol, endoplasmic reticulum	81.42	81.42
KRH24948	Soybean	cytosol	81.42	81.42
KRH22944	Soybean	cytosol	81.42	81.22
KRH10401	Soybean	cytosol, endoplasmic reticulum	80.81	80.41
AT2G28520.1	Thale cress	cytosol	79.95	80.05
CDY04571	Canola	cytosol	77.26	79.6
CDY53381	Canola	cytosol	77.38	79.22
CDY15756	Canola	cytosol	77.38	79.22
CDX77187	Canola	cytosol	76.41	78.72
Zm00001d042969_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	22.49	78.3
CDX83292	Canola	cytosol	78.73	78.25
Bra011941.1-P	Field mustard	cytosol	77.87	77.59
Bra035693.1-P	Field mustard	cytosol	77.26	77.07
GSMUA_Achr7P22660_001	Banana	cytosol	75.31	76.14
CDY63878	Canola	cytosol, plasma membrane, plastid	78.97	76.0
EES03840	Sorghum	cytosol	74.94	74.94
Zm00001d012446_P002	Maize	cytosol	74.69	74.69
Os01t0834200-01	Rice	cytosol	73.11	73.11
TraesCS3D01G346900.1	Wheat	golgi, unclear	72.37	72.46
TraesCS3B01G385500.1	Wheat	cytosol	72.25	72.34
TraesCS3A01G352800.1	Wheat	cytosol	72.0	72.09
CDX83291	Canola	cytosol	14.67	65.93
Bra000490.1-P	Field mustard	cytosol	76.53	65.55
VIT_13s0175g00200.t01	Wine grape	cytosol	14.79	63.02
PGSC0003DMT400071849	Potato	cytosol	62.59	62.59
Zm00001d046282_P001	Maize	cytosol	10.88	61.38
KXG29301	Sorghum	cytosol	3.18	60.47
Zm00001d040680_P001	Maize	mitochondrion	7.58	54.39

Protein Annotations

EntrezGene:102604946	MapMan:24.1.1.1.1	ncoils:Coil	GO:GO:0000220	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006810
GO:GO:0006811	GO:GO:0008150	GO:GO:0015078	GO:GO:0015991	GO:GO:0015992	GO:GO:0016020
GO:GO:0016021	GO:GO:0033179	UniProt:M1AC03	PFAM:PF01496	EnsemblPlantsGene:PGSC0003DMG400007498	PGSC:PGSC0003DMG400007498
EnsemblPlants:PGSC0003DMT400019381	PIRSF:PIRSF001293	PANTHER:PTHR11629	PANTHER:PTHR11629:SF72	TMHMM:TMhelix	UniParc:UPI000294EEDA
InterPro:V-ATPase_116kDa_su	InterPro:V-type_ATPase_116kDa_su_euka	RefSeq:XP_006365749.1	SEG:seg	:	:

Description

Vacuolar proton atpase [Source:PGSC_GENE;Acc:PGSC0003DMG400007498]

Coordinates

chr6:+:55952230..55961384

Molecular Weight (calculated)

93498.6 Da

IEP (calculated)

6.102

GRAVY (calculated)

0.080

Length

818 amino acids

Sequence
(BLAST)

001: MEYIDNMPLM DLMRSEKMTF VQLIIPAESA HRAITYLGQL GLLQFRDLNA KKSPFQRTFV NQVKRCVEMG RKLRYFKDQI HKAGLLLPPL PASQPDTELE
101: EIEIQLAEHE HELIEMNANS EKLRQSYNEL LEFKMVLQKA SGFLVSSSSH TTDREIELDE NVYSNDNHGD TASLIEQEMH SELSNQSGVR FISGIICNSK
201: VLQFERMLFR ATRGNMLFNQ AVADDEILDP SSNEMVEKIV FVVFFSGEQA RTKILKICEA FSANCYPVPE DTTKRRQITQ EVLSRLSELE TTLDAGLRHR
301: DKALTSIGYH LTKWINMVKT QKAVYDTLNM LNFDVTKKCL VGEGWCPIFA KTKIQEALQR ATFDSSSQVG IIFHVMDAVE SPPTYFRTNR FTNAFQEIVD
401: AYGVAKYQEA NPAVYTIVTF PFLFAVMFGD WGHGICLLLG ALVLIARESK LSSQKLGSFM EMLFGGRYVL LLMSIFSIYC GLIYNEFFSV PFHIFGDSAY
501: KCRDATCSDA QTVGLIKYKD PYPFGVDPSW RGSRSELPFL NSLKMKMSIL LGVAQMNLGI ILSYFNARFF SSSLDIKYQF IPQIIFLNSL FGYLSLLVVV
601: KWCTGSQADL YHVMIYMFLS PFEALGENRL FWGQSVLQVI LLLLALIAVP WMLFPKPFIL KRLHMERFQG RTYGMLGTSE MGSDDQPDSA RERAEEFNFS
701: EVFVHQMIHS IEFVLGAVSN TASYLRLWAL SLAHSELSTV FYEKVLLLAW GYENIIIRLV GLAVFAFATA FILLMMETLS AFLHALRLHW VEFQNKFYHG
801: DGYKFMPFSF ALLADDED

Best Arabidopsis Sequence Match ( AT2G28520.1 )
(BLAST)

001: MEEFLDKLPQ MDLMRSEKMT LVQLIIPVES AHRSITYLGE LGLLQFRDLN ADKSPFQRTF ANQVKRCGEM SRKLRFFKDQ IDKAGLRCSP RLEIEPDIAL
101: GDLERQLADH EHEVLEMNSN SEKLRQTYNE LLEFKIVLEK ASGFLVSSNT HAIGEEIELH ESTYSNNGFI ETASLLEQEM NPGHSNQSGL RFISGIINKD
201: KLLKFERMLF RATRGNMLFN QTTSDEEIMD PSTSEMVEKV VFVVFFSGEQ ARTKILKICE AFGANCYPVP EDTTKQRQLT REVLSRLSDL EATLDAGTRH
301: RNNALNSVGY SLTNWITTVR REKAVYDTLN MLNFDVTKKC LVGEGWCPTF AKTQIHEVLQ RATFDSSSQV GVIFHVMQAV ESPPTYFRTN KLTNAFQEII
401: DAYGVARYQE ANPAVYSVVT YPFLFAVMFG DWGHGLCLLL GALYLLARER KLSTQKLGSF MEMLFGGRYV ILLMALFSIY CGLIYNEFFS VPFHIFGGSA
501: YKCRDTTCSD AYTVGLIKYR DPYPFGVDPS WRGSRTELPY LNSLKMKMSI LLGIAQMNLG LILSFFNARF FGSSLDIRYQ FIPQMIFLNS LFGYLSLLII
601: IKWCTGSQAD LYHVMIYMFL SPTEELGENE LFWGQRPLQI VLLLLAFIAV PWMLFPKPFA LRKIHMERFQ GRTYGVLVSS EVDLDVEPDS ARGGGHHEEE
701: FNFSEIFVHQ LIHSIEFVLG SVSNTASYLR LWALSLAHSE LSTVFYEKVL LLAWGYENIL IRLIGVAVFA FATAFILLMM ETLSAFLHAL RLHWVEFMGK
801: FFNGDGYKFK PFSFALI

Arabidopsis Description

VHA-A1V-type proton ATPase subunit a1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.