Factsheet for Solyc01g110120.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

cytosol 3
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 25464976
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0184300-01	Rice	plasma membrane	10.61	82.86
VIT_03s0038g00290.t01	Wine grape	cytosol	79.76	79.56
KRH24405	Soybean	endoplasmic reticulum	78.17	78.36
CDY41958	Canola	cytosol	77.68	77.97
Bra011878.1-P	Field mustard	cytosol	71.1	77.94
Bra010712.1-P	Field mustard	cytosol	77.8	77.9
CDX90307	Canola	cytosol	77.8	77.9
KRH29384	Soybean	endoplasmic reticulum	77.68	77.87
GSMUA_Achr5P18710_001	Banana	cytosol, extracellular	76.71	77.85
CDY42603	Canola	cytosol	77.56	77.75
CDY12118	Canola	cytosol	77.44	77.44
AT4G39080.1	Thale cress	cytosol, nucleus, plasma membrane	77.2	77.1
AT2G21410.1	Thale cress	cytosol	76.46	76.37
Bra031187.1-P	Field mustard	cytosol	76.1	76.0
CDX82029	Canola	cytosol	75.98	75.88
EER95168	Sorghum	cytosol	75.85	75.67
TraesCS4D01G223300.2	Wheat	cytosol	75.73	75.64
Bra030300.1-P	Field mustard	cytosol	75.37	75.55
Zm00001d047910_P001	Maize	plasma membrane	75.49	75.49
CDX99594	Canola	cytosol	75.73	75.46
TraesCS4A01G081100.1	Wheat	cytosol	75.49	75.4
CDY15895	Canola	cytosol	75.24	75.34
Os03t0251500-01	Rice	plasma membrane	75.24	75.24
TraesCS4B01G222700.3	Wheat	cytosol	75.73	75.09
Solyc07g032080.2.1	Tomato	plastid	74.88	75.06
Zm00001d028436_P001	Maize	mitochondrion, plastid	74.63	74.45
HORVU2Hr1G109990.2	Barley	vacuole	72.07	72.16
TraesCS2B01G520900.1	Wheat	cytosol	71.59	71.67
TraesCS2D01G493000.1	Wheat	cytosol	71.46	71.55
TraesCS2A01G492800.1	Wheat	cytosol	70.98	71.06
KRG89695	Soybean	extracellular, mitochondrion	5.49	69.23
CDY61341	Canola	cytosol	23.29	66.78
HORVU4Hr1G062880.3	Barley	plasma membrane, vacuole	74.88	66.24
CDY13818	Canola	cytosol, nucleus, plastid	63.66	65.33
Solyc06g075400.2.1	Tomato	cytosol	63.66	63.81
Solyc11g072530.1.1	Tomato	cytosol	63.66	63.74
CDY71986	Canola	cytosol	17.32	63.68
CDX96169	Canola	cytosol, plasma membrane, plastid	16.95	60.7

Protein Annotations

MapMan:24.1.1.1.1	ncoils:Coil	GO:GO:0000220	GO:GO:0000325	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0006139	GO:GO:0006810	GO:GO:0006811	GO:GO:0007035
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015078	GO:GO:0015986
GO:GO:0015991	GO:GO:0015992	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016471
GO:GO:0016787	GO:GO:0019725	GO:GO:0033179	GO:GO:0046961	GO:GO:0051117	GO:GO:0070072
UniProt:K4B3M5	PFAM:PF01496	PIRSF:PIRSF001293	PANTHER:PTHR11629	PANTHER:PTHR11629:SF89	EnsemblPlantsGene:Solyc01g110120.2
EnsemblPlants:Solyc01g110120.2.1	TMHMM:TMhelix	UniParc:UPI0002768DA1	InterPro:V-ATPase_116kDa_su	InterPro:V-type_ATPase_116kDa_su_euka	SEG:seg

Description

V-type proton ATPase subunit a [Source:UniProtKB/TrEMBL;Acc:K4B3M5]

Coordinates

chr1:-:96892285..96902719

Molecular Weight (calculated)

92754.2 Da

IEP (calculated)

6.131

GRAVY (calculated)

0.033

Length

820 amino acids

Sequence
(BLAST)

001: MAEQTGGGCC PPMDLFRSES MQLVQIIIPN ESAHRTIDYL GEIGLIQFKD LNAEKSPFQR TYANQIKRCG EMARKLRLFK EQMSKAGLLS SSTSATQVDL
101: SFDDLEVKLG ELESELIEMN ANGDKLQRSY NELVEYRLVL KKAGEFFHIA QSSAEALHRE QASNQTGEQS LETPLLSEQE AVTDPSKQVK LGFITGLVPR
201: EKSMAFERIL FRATRGNVYL RQAVVEEPVI DPVSGEKVEK NVFAVFFSGE RAKSKILKIC EAFGANRYSV PEDLGKQAQM ITEVSGRISE LKTTIDAGLV
301: HRGNLLRTIG EHYDRWNILA RKEKSIYHTL NMLSIDVTKK CLVAEGWSPV FATKQIQDAL QRATHDSNSE VGAIFRVLRT REMPPTYFQT NKFTSSFQDI
401: VDAYGVAKYQ EANPGVYTIV TFPFLFAVMF GDWGHGICLL LATMFFLFNE KKFSSQKLGD IMEMTFGGRY VIFMMSLFSI YTGLVYNEFF SVPFELFGKS
501: AYGCRDPSCR DSTTAGLIKV RDTYPFGVDP AWHGSRSELP YLNSLKMKMS ILIGVAQMNL GIILSFFNAL FFRNGVNIWC QFIPQMIFLN ALFGYLSVLI
601: IVKWCTGSKA DLYHVMIYMF LSPTDELGEN QLFAGQKMTQ LVLLLSALVA VPWMLFPKPF LLKAQHERHQ GQSYTALQEA EESLLVESND DSGHHGEFEF
701: SEIFVHQLIH TIEFVLGAVS NTASYLRLWA LSLAHSELSS VFYEKVLLLA WGYNNIIILI VGIIVFIFAT VGVLLVMETL SAFLHALRLH WVEFQNKFYE
801: GDGYKFSPFS FKLIDLGEDE

Best Arabidopsis Sequence Match ( AT4G39080.1 )
(BLAST)

001: MAESGGGGGC CPPMDLMRSE TMQLVQLIVP MESAHLTVSY LGDLGLVQFK DLNSEKSPFQ RTYAAQIKRC GEMARKIRFF RDQMSKAGVP AKEMQGKEND
101: IDLDDVEVKL GELEAELVEI NANNDKLQRS YNELMEYKLV LQKAGEFFSS AHRSAADQQR ETESQQAGED LLESPLLQEE KSIDSTKQVK LGFLTGLVPR
201: EKSMVFERIL FRATRGNIFI RQTVIEEPVI DPNSGEKAEK NVFVVFYSGE RAKSKILKIC EAFGANRYPF SEDLGRQAQM ITEVSGRLSE LKTTIDAGLG
301: QRNILLQTIG DKFELWNLKV RKEKAIYHTL NMLSLDVTKK CLVAEGWSPV FASREIQDAL QRAAVDSNSQ VGSIFQVLRT KESPPTYFRT NKFTSAIQEI
401: VDAYGVAKYQ EANPGVFTIV TFPFLFAVMF GDWGHGICIL LATMYLILKE KKLASQKLGD IMEMAFGGRY VILMMSLFSI YTGLIYNEFF SIPFPLFAPS
501: AYDCRDVSCS EATTIGLIKV RDTYPFGLDP VWHGSRSELP FLNSLKMKMS ILLGVSQMNL GIIMSYFNAR FFKSSVNIWF QFIPQMIFLN SLFGYLSVLI
601: IIKWCTGSQA DLYHVMIYMF LSPMDELGEN QLFPHQKTLQ LVLLFLALVS VPCMLLPKPF ILKKQHEARH QGQAYAPLDE TDESLHVETN GGGSHGHEEF
701: EFSEIFVHQL IHTIEFVLGA VSNTASYLRL WALSLAHSEL SSVFYEKVLL LAWGYNNPLI LIVGVLVFIF ATVGVLLVME TLSAFLHALR LHWVEFQNKF
801: YEGDGYKFAP FTFIFTANED E

Arabidopsis Description

VHA-A3V-type proton ATPase subunit a3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4S4]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.