Factsheet for Os03t0251500-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 3
mitochondrion 2
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plasma membrane: 19502382
nucleus: 19621931
plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19502382 doi

M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto

Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95168	Sorghum	cytosol	87.68	87.47
Zm00001d047910_P001	Maize	plasma membrane	87.2	87.2
Zm00001d028436_P001	Maize	mitochondrion, plastid	86.83	86.62
TraesCS4D01G223300.2	Wheat	cytosol	86.22	86.11
TraesCS4B01G222700.3	Wheat	cytosol	86.46	85.73
TraesCS4A01G081100.1	Wheat	cytosol	85.73	85.63
Os10t0184300-01	Rice	plasma membrane	10.73	83.81
GSMUA_Achr5P18710_001	Banana	cytosol, extracellular	78.29	79.46
VIT_03s0038g00290.t01	Wine grape	cytosol	76.46	76.28
AT4G39080.1	Thale cress	cytosol, nucleus, plasma membrane	76.22	76.13
HORVU4Hr1G062880.3	Barley	plasma membrane, vacuole	85.85	75.94
Bra010712.1-P	Field mustard	cytosol	75.49	75.58
Solyc01g110120.2.1	Tomato	nucleus, plastid	75.24	75.24
Solyc07g032080.2.1	Tomato	plastid	74.76	74.94
Bra011878.1-P	Field mustard	cytosol	68.29	74.87
PGSC0003DMT400071849	Potato	cytosol	74.51	74.69
Bra031187.1-P	Field mustard	cytosol	74.39	74.3
KRH24405	Soybean	endoplasmic reticulum	73.9	74.08
Bra030300.1-P	Field mustard	cytosol	73.78	73.96
AT2G21410.1	Thale cress	cytosol	74.02	73.93
KRG89695	Soybean	extracellular, mitochondrion	5.85	73.85
KRH29384	Soybean	endoplasmic reticulum	73.41	73.59
VIT_18s0001g13410.t01	Wine grape	cytosol	72.2	73.27
KRH51766	Soybean	endoplasmic reticulum	71.95	72.39
KRH61086	Soybean	cytosol, mitochondrion	58.05	69.9
CDX80454	Canola	extracellular	5.37	61.97
Os01t0834200-01	Rice	cytosol	61.1	61.25
CDX89488	Canola	cytosol	7.07	43.28

Protein Annotations

MapMan:24.1.1.1.1	EntrezGene:4332270	ProteinID:ABF94992.1	EMBL:AK101151	ProteinID:BAF11486.1	ProteinID:BAS83290.1
ncoils:Coil	ProteinID:EAZ26290.1	GO:GO:0000220	GO:GO:0000325	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0006139	GO:GO:0006810	GO:GO:0006811	GO:GO:0007035
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015078	GO:GO:0015986
GO:GO:0015991	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016471	GO:GO:0016787
GO:GO:0019725	GO:GO:0033179	GO:GO:0046961	GO:GO:0051117	GO:GO:0070072	EnsemblPlantsGene:Os03g0251500
EnsemblPlants:Os03t0251500-01	PFAM:PF01496	PIRSF:PIRSF001293	PANTHER:PTHR11629	PANTHER:PTHR11629:SF89	UniProt:Q10P12
TMHMM:TMhelix	UniParc:UPI0000DB4920	InterPro:V-ATPase_116kDa_su	InterPro:V-type_ATPase_116kDa_su_euka	RefSeq:XP_015632819.1	SEG:seg

Description

Similar to T-cell immune regulator 1 transcript variant 3 (Fragment). (Os03t0251500-01)

Coordinates

chr3:+:7982396..7989433

Molecular Weight (calculated)

92377.8 Da

IEP (calculated)

6.158

GRAVY (calculated)

0.034

Length

820 amino acids

Sequence
(BLAST)

001: MARGGGGGCC PPMDLMRSEA MQLVQVIIPT ESAHLTVSYL GELGLLQLKD LNADKSPFQR TYAAQIKRCG EMARKLRFFK EQMSKAGIST SAQLTEISLD
101: FDDLEIKLGE LEAELAEVNA NNEKLKRTYN ELLEYSTVLQ KAGEFFYSAQ RSAAAQQREM EANQSGESSL ESPLLEQDTL TDASKQVKLG SLSGLVPKEK
201: AMAFERILFR ATRGNIFLRQ ESVDEPVTDP VSGEKVAKNA FVIFYSGDRA KAKILKICDA FNANRYPFPE DVARQLHAVQ EVSAKISELK ATIDMGLAHR
301: DNILKNIASE FENWNRLANK EKIIYHTLNM LSVDVTKKCL VGEGWSPVFA TTQIQDALQR ATLDSKSQVG SIFQVLNTTE SPPTYFQTNK FTSAFQEIVD
401: AYGIAKYQEA NPGVFTIVTF PFLFAVMFGD WGHGICILVS TLYLIIREKK FASQKLGDIM EMMFGGRYVI IMMALFSIYT GLIYNEFFSV PFELFGKSAY
501: ACRDPSCGDA ATEGLLKVRR TYPFGVDPVW HGSRSELPFL NSLKMKMSIL LGVAQMNLGI VISYFNAKFF RNSVNVWYQF IPQLIFLNSL FGYLSMLIII
601: KWSTGAKADL YHTMIYMFLS PTDELGENQL FPGQKTVQLV LLLLALVSVP WMLIPKPFFL KMEHERRHQG QQYAMLQSTD DSVVAEMGHH NGSNHHEEFE
701: FSEVFVHQLI HTIEFVLGAV SNTASYLRLW ALSLAHSELS SVFYDKVLLL AFGYNNILIR IAGITIFICA TVGVLLVMET LSAFLHALRL HWVEFQNKFY
801: EGDGYKFAPF SFALISEEED

Best Arabidopsis Sequence Match ( AT4G39080.1 )
(BLAST)

001: MAESGGGGGC CPPMDLMRSE TMQLVQLIVP MESAHLTVSY LGDLGLVQFK DLNSEKSPFQ RTYAAQIKRC GEMARKIRFF RDQMSKAGVP AKEMQGKEND
101: IDLDDVEVKL GELEAELVEI NANNDKLQRS YNELMEYKLV LQKAGEFFSS AHRSAADQQR ETESQQAGED LLESPLLQEE KSIDSTKQVK LGFLTGLVPR
201: EKSMVFERIL FRATRGNIFI RQTVIEEPVI DPNSGEKAEK NVFVVFYSGE RAKSKILKIC EAFGANRYPF SEDLGRQAQM ITEVSGRLSE LKTTIDAGLG
301: QRNILLQTIG DKFELWNLKV RKEKAIYHTL NMLSLDVTKK CLVAEGWSPV FASREIQDAL QRAAVDSNSQ VGSIFQVLRT KESPPTYFRT NKFTSAIQEI
401: VDAYGVAKYQ EANPGVFTIV TFPFLFAVMF GDWGHGICIL LATMYLILKE KKLASQKLGD IMEMAFGGRY VILMMSLFSI YTGLIYNEFF SIPFPLFAPS
501: AYDCRDVSCS EATTIGLIKV RDTYPFGLDP VWHGSRSELP FLNSLKMKMS ILLGVSQMNL GIIMSYFNAR FFKSSVNIWF QFIPQMIFLN SLFGYLSVLI
601: IIKWCTGSQA DLYHVMIYMF LSPMDELGEN QLFPHQKTLQ LVLLFLALVS VPCMLLPKPF ILKKQHEARH QGQAYAPLDE TDESLHVETN GGGSHGHEEF
701: EFSEIFVHQL IHTIEFVLGA VSNTASYLRL WALSLAHSEL SSVFYEKVLL LAWGYNNPLI LIVGVLVFIF ATVGVLLVME TLSAFLHALR LHWVEFQNKF
801: YEGDGYKFAP FTFIFTANED E

Arabidopsis Description

VHA-A3V-type proton ATPase subunit a3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4S4]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.