Factsheet for AT1G42980.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G32400.2	Thale cress	cytosol	45.15	27.27
AT5G07780.1	Thale cress	plastid	34.78	22.41
AT5G07770.3	Thale cress	plastid	34.45	14.13
AT5G07650.1	Thale cress	cytosol	38.13	13.99
AT1G31810.1	Thale cress	cytosol	56.19	13.66
AT5G07760.2	Thale cress	cytosol, plastid	38.13	13.15
AT2G25050.1	Thale cress	cytosol	46.49	11.9
AT5G58160.1	Thale cress	cytosol	41.14	9.72
AT5G07740.2	Thale cress	nucleus	43.14	7.66
AT3G07540.1	Thale cress	plasma membrane	17.06	6.06
AT5G54650.1	Thale cress	extracellular, mitochondrion, nucleus, plasma membrane	17.73	5.89
AT1G70140.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	14.72	5.79
AT3G05470.1	Thale cress	extracellular, golgi, plasma membrane	17.06	5.77
AT5G48360.1	Thale cress	extracellular, vacuole	15.05	5.75
AT2G43800.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	16.05	5.37
AT1G24150.2	Thale cress	endoplasmic reticulum	8.7	4.91
AT5G67470.1	Thale cress	extracellular, plasma membrane, vacuole	14.38	4.78
AT1G59910.1	Thale cress	nucleus	14.05	4.52
AT3G25500.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	15.38	4.38
AT3G25493.1	Thale cress	vacuole	2.34	4.38
AT4G15200.2	Thale cress	extracellular, golgi, plasma membrane	4.68	3.0
Zm00001d030782_P001	Maize	mitochondrion	17.06	2.5
AT3G32420.1	Thale cress	cytosol	0.33	0.93
Os06t0184400-00	Rice	mitochondrion	0.67	0.57
TraesCS7A01G148100.1	Wheat	mitochondrion	0.67	0.36
TraesCS7D01G150000.1	Wheat	mitochondrion	0.67	0.34
TraesCS7B01G051900.1	Wheat	mitochondrion	0.67	0.33
HORVU7Hr1G030310.1	Barley	cytosol, plastid	0.67	0.33
HORVU0Hr1G019600.1	Barley	plasma membrane	0.0	0.0

Protein Annotations

Gene3D:1.20.58.2220	MapMan:20.2.2.6.2	EntrezGene:840896	ProteinID:AAG51518.1	ProteinID:AEE31934.1	ArrayExpress:AT1G42980
EnsemblPlantsGene:AT1G42980	RefSeq:AT1G42980	TAIR:AT1G42980	RefSeq:AT1G42980-TAIR-G	EnsemblPlants:AT1G42980.1	TAIR:AT1G42980.1
Unigene:At.49946	ncoils:Coil	InterPro:FH2_Formin	GO:GO:0003674	GO:GO:0003779	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015425	RefSeq:NP_174997.2	PFAM:PF02181	PO:PO:0000293	PFscan:PS51444
PANTHER:PTHR23213	PANTHER:PTHR23213:SF334	UniProt:Q9C7S1	SUPFAM:SSF101447	UniParc:UPI000034F453	SEG:seg

Description

FH12Formin-like protein 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7S1]

Coordinates

chr1:+:16133286..16135587

Molecular Weight (calculated)

34170.5 Da

IEP (calculated)

4.743

GRAVY (calculated)

-0.160

Length

299 amino acids

Sequence
(BLAST)

001: MASNCEKMLS KIKIPLPDML NAVLDLDSSA VIIDQIKNLI KICWSKEEMD RLRNSAGGDK EVLGKCEEIF GELMMVPRIE PKLRVFAFKV EYPSRVSDLK
101: MWMHTIIAAT KEITGSVKLF RIMQTSLTMQ VLRGSNVECG LDSLVKLCDN VYLMHDFCKL LDFGNDLVHL EAASRIELET ITNKMQELFD IEEEVNDEFL
201: ASENDGANFV GYRNVVHDFL CTIDGDKQLL NILYAEVGGL VNSYIAEYPS GVRFKEATNI LTRFVETFYK SREEIERQAE AEKEILEKRK MNIKQNGNL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.